Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01722 ATGCCTTTGGAAAGAATGGACCAGAGGGGTGTTGCTGCCTCATCCCACTTTTTTGATGACATTTCTTATGCTTCTGAGAGGAATGTTGGATTGTGGAAGCCAAAATCTATTCATGATCATTATCCAGAAGGTGAGGTCAATCAGCTCTTTATCTGTTCAAGAAAGTCCAGAAAGAGTGAAATGGTGGCATCACCTGGCAGCATTTTGAATGCTTCATCACCCCTTGGAACAAGTGCAAAAACAGGCTTGCCAATGTCGCAGACTAGTCTATCTGGTTCAGAAAAGCTACACTTTGGTGGAGAAGCAGGCATTATAGGCATGCTGAAGGATTCTAAGGAATCATTGAATTATCATCCGAGATCATGGTCTGATGTGCATAGGCAGCCAGCATCTAGCTCATATGGTTTAATTGGGAACAGGATTGTCACCAATGCAGGCTCACGTGAAAGTAGTCTATTCTCAAGTTCACTGTCTGATATATTTAGCCAAAAGTTGCGGTTATTGGGGAATGATGTTCTGTCTGATCAGCCCATTACTGTTGGTCCCTTTACTGAGGAAGAACCATATAAATCTCCTGAAGAAATTGAAGCTGACACTATTGGAAGTCTCCTTCCTCATGAAGATGATCTGTTTTCTGGTGTCACTGATGAGTTAGGGAGCAGTGCTCATGCTAGAACGAGTGATGATTTTGAAGATTTTGATTTGTTCAGCAGTGGTGGAGGCATGGAGTTGGAAGGAGATGAACATCTAGTTTCAGGAAAAATAACCAGTTGCATGGATGGGGATCCTGGTTACTTTGGGGGTTCTAAAGGAAAATTTCCTGTAAATGAACAATCTTCTAGAACACTTTTTGTTAGAAACATTAATAGCAGTGTAGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGAGATCCGAACCATTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACCTAAAGGCAGCACAAAGTGCAATGAAAGCACTTCAAAATAGGTCATTGAAATCTAGGAACCTTGATATACATTATTCAATTCCAAAGGGAAATGCTCCAGAGAAGGATATTGGCCATGGTACCCTGATGATATCTGGTCTTGATACATCTGTTTTGAATGATGAACTTAAACGTATTTTTGGGTTTTATGGAGAAATTAAAGAAATTTATGAATATCCAGAAATGAATAATATCAAATACATTGAGTTTTATGATGTCCGAAGTGCAGAATCTTCTCTACGTGCATTGAATGGGATCTGCATTGCTGGGAAACACATCAAACTTGAACCTGGCCATCCTAGGATTGCAACATGTATGATGCAGCAGTCTCAAAAAGGACAAGATGAACCTGATCTTGGTCATAATCTCAATGACAACTTATTATTAAGACAGAAGGGAGTGTCTTCTGGAGTTATTGCATCTGGTGGCAGCTTGGAAAATGGATACAGTCAAAGATTTCAATCTGCATCACGGCTACCTTTGAATGCTTTCATTGATAACGCATTCTTTAATGTGAATTCTAGCTTACACAAGACTGCAAGAGGGGCATCTGTTGGAAAAGTATCTGGTGTTAGTGAGTCCATTAACGTTGTTGATGCAATGCAATTTGCATCCGTTCCGAGATTCCATCCTCATTCTTTACCAGAGTATCGTGATAGTTTAGCTAATGGTAGTCCTTACAACTTTTCAAGCACCATTAACATGGCTGCAAATATTGGAACTGGATCAACAGAAGTGTCTGACAGCAGGCACATTCAGGGAATGGGCTCAACTGGGAACCTGGCAGAATTTAATGGAGGAGGAAATGGGAGCCACCCCCGTCAACTTTATCATATGTGGAATGGCTCCAACTTGCATCAGCAACCTCCATCAAATGGCATGCTTTGGCAGAAAACACCATCCTTTGTTAATGGTGCTTGTGCTCCATGTCCTCCACAGATTCCCAGCTTTCCCAGGACACCGCCTCATGTACTGAGAGCATCACATATAGACCACCATGTTGGATCAGCACCAGTTGTTACAGCCTCACCCTGGGAAAGACAGCATTCTTACATGGGAGAGTCTCCTGATGCTTCTGGTTTTAGATTGGGCTCTCTAGGAAGTGCTGGTTTTCATGGTAGCTGGCAGTTGCAACCTTCAGATTTTTCTGGCAACATGTTTTCCCATGTTGGTGGGAATGGTACTGAATTGACATCCAATGCCGGGCAGGGCTCTCCTAAGCAGTTGTCTCATGTTTTCCCCGGGAGACTTCCCATGACTTCAATGTCAAAATTTGATTCTACCAATGAACGAATGAGAAACCTCTACCATCGCAGAAGTGAAGCAAACAACAACAATGCTGATAAAAAACAATATGAACTTGACCTAGGCCGCATATTGCGTGGGGAAGACAACCGAACAACGCTTATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGATTTTCTGTATTTGCCAATTGATTTCAAGGCAAGTATTTATTTGAAGTTGAACAAATGTAATGTTGGCTATGCATTCATCAATATGATTGATCCTGGTCAAATAATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTTGCTGTACTTGCATATGCCCGGATTCAAGGAAAAGCTGCTCTTATTGCTCATTTTCAGAATTCAAGCCTGATGAATGAAGATAAACGCTGCCGTCCTATTCTTTTCCATACAGATGGCCCAAATGCTGGTGATCCGGAGCCTTTCCCCTTGGGTACCAATATTAGACCGAGGCCTGGAAAAACACGCATTAATGGTAATGAGGAGAATCGCAACCAAGGGAATCCTTCTACTTTGGCAACTGGAGAGGAGTCTGCTAATGGAATAGACTCTTCAATGAGTTCTTCAAGGGATGCTGACTGA 2967 0.4162 MPLERMDQRGVAASSHFFDDISYASERNVGLWKPKSIHDHYPEGEVNQLFICSRKSRKSEMVASPGSILNASSPLGTSAKTGLPMSQTSLSGSEKLHFGGEAGIIGMLKDSKESLNYHPRSWSDVHRQPASSSYGLIGNRIVTNAGSRESSLFSSSLSDIFSQKLRLLGNDVLSDQPITVGPFTEEEPYKSPEEIEADTIGSLLPHEDDLFSGVTDELGSSAHARTSDDFEDFDLFSSGGGMELEGDEHLVSGKITSCMDGDPGYFGGSKGKFPVNEQSSRTLFVRNINSSVEDSELKALFEQYGEIRTIYTACKHRGFVMISYYDLKAAQSAMKALQNRSLKSRNLDIHYSIPKGNAPEKDIGHGTLMISGLDTSVLNDELKRIFGFYGEIKEIYEYPEMNNIKYIEFYDVRSAESSLRALNGICIAGKHIKLEPGHPRIATCMMQQSQKGQDEPDLGHNLNDNLLLRQKGVSSGVIASGGSLENGYSQRFQSASRLPLNAFIDNAFFNVNSSLHKTARGASVGKVSGVSESINVVDAMQFASVPRFHPHSLPEYRDSLANGSPYNFSSTINMAANIGTGSTEVSDSRHIQGMGSTGNLAEFNGGGNGSHPRQLYHMWNGSNLHQQPPSNGMLWQKTPSFVNGACAPCPPQIPSFPRTPPHVLRASHIDHHVGSAPVVTASPWERQHSYMGESPDASGFRLGSLGSAGFHGSWQLQPSDFSGNMFSHVGGNGTELTSNAGQGSPKQLSHVFPGRLPMTSMSKFDSTNERMRNLYHRRSEANNNNADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKASIYLKLNKCNVGYAFINMIDPGQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGTNIRPRPGKTRINGNEENRNQGNPSTLATGEESANGIDSSMSSSRDAD. 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01722 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 439 IPR000504 GO:0003723
Seca3g01722 988 PANTHER RNA RECOGNITION MOTIF-CONTAINING 56 979 - -
Seca3g01722 988 SMART rrm1_1 282 350 IPR000504 GO:0003723
Seca3g01722 988 SMART rrm1_1 367 435 IPR000504 GO:0003723
Seca3g01722 988 MobiDBLite consensus disorder prediction 954 988 - -
Seca3g01722 988 SUPERFAMILY RNA-binding domain, RBD 807 899 IPR035979 GO:0003676
Seca3g01722 988 Gene3D - 272 363 IPR012677 -
Seca3g01722 988 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Seca3g01722 988 MobiDBLite consensus disorder prediction 926 988 - -
Seca3g01722 988 Gene3D - 364 458 IPR012677 -
Seca3g01722 988 Pfam RNA recognition motif 2 805 908 IPR007201 -
Seca3g01722 988 CDD RRM3_MEI2_like 808 900 IPR034454 -
Seca3g01722 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 347 IPR000504 GO:0003723
Seca3g01722 988 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 368 433 IPR000504 GO:0003723
Seca3g01722 988 FunFam Protein MEI2-like 1 365 459 - -
Seca3g01722 988 CDD RRM1_MEI2_like 280 355 IPR034453 -
Seca3g01722 988 SUPERFAMILY RNA-binding domain, RBD 278 437 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01722 Seca-Chr3 29931034 29939124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01722 278 432 Eukaryotic Initiation Factors Gene Family AT3G16380 24.432 2.69e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01722 - - aprc:113865455 1561.2