Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01718 ATGGCATCATCAGAGGTGACGATGAAGGGGAATTGTTTGAATCACAACGATGGTAGTAGGAACGCTACAACAGAGGGTCATTCACCCTCCACGGCGAGAGTGGTAGAAGACGCGGAAGCTGCGCTTTACAGGGAGCTATGGCATGCCTGTGCTGGTCCCCTTGTAACTGTGCCCAGGGAAGGAGAACGGGTCTTTTATTTCCCTCAGGGACATATTGAACAGGTGGAGGCGTCGACGAATCAGGTGGCGGACCAGCATATGCCAGTGTACGATCTACCACCCAAGATCCTTTGTAGAGTCATCAACGTGCAGTTGAAGGCGGAGCCGGACACGGATGAGGTGTTTGCCCAGGTCACCTTACTTCCAGAGGCAAATCAAGATGAGAATGCCGTGGAGAAAGAGCCTCCGCCTCCTCCGCCTCCGCGATTTCATGTTCATTCTTTCTGTAAAACTCTGACGGCCTCCGATACCAGTACCCATGGTGGGTTTTCCGTACTGAGACGGCATGCTGATGAATGCCTTCCTCCACTGGACATGTCGAAGCAGCCACCAACCCAGGAATTGGTGGCGAAGGATTTGCACGCGAATGAGTGGCGGTTTAGACATATCTTCCGGGGTCAACCCCGTAGACACTTACTTCAGAGTGGTTGGAGTGTTTTTGTAAGCTCCAAAAGGCTTGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAACTTCGTGTTGGTGTCAGGCGAGCAATGAGGCAGCAGGGTAATGTTCCATCCTCAGTTATTTCTAGCCACAGCATGCATCTTGGGGTCCTTGCAACTGCTTGGCATGCCATCTTGACCAAGACCATATTCACTGTTTATTACAAGCCTAGGACCAGTCCTGCTGAATTTATTGTTCCATATGATCAATATATGGAGTCTCTAAAAAATAATTATACCATAGGGATGCGGTTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCGGAGCAGAGGTTTACTGGTACCATTGTTGGAATAGAAGATGTTGATTCCAAAAGGTGGAGAGAATCCAAATGGAGATGCCTCAAGGTAAGATGGGATGAAACATCTAACACACCTCGCCCTGAGCGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTGAATCCTCTTTCAATGCCCAGGCCTAAAAGGCCTCGGTCTAATGCTGTTCCATCATCCCCAGGTTCTTCTGTTCTTACTCGAGAAGCATCATCTAAAGTAAGCGTAGACCCTCTACCAGCAAATGGATTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGCCTGACACTGCTGAGAAGTCTGTTGGCTGGCCACCTGCAGTAGATGATGAGAAAATTGATGTTTCTACTTCAAGGAGGTATGGGTCAGAGAGCTGGATGTCAATGGGGAGGAATGAGCCTACTTATTCTGATCTTCTTTCAGGCTTTGGGGCCAGTGGAGATCCTTCTCATCCATCCTTGGTTGACCAAATGACCCCTGTTGCTTATCCTGCTAGAAAGCATTCAGTAGATCATGAAGGCAAACTTCATGTCCCTCATCCGTGGCCTGTAATGCCTTCTAGTCTATCACTAAACCTCTTGGACAGTAATACCAAAGGTTCTGCACATGGTAGTGATACCGCATACCAAGCTCGAGGGAATTTGAGGTACACTGCGTTTGGTGAATACCCCATGCTTCATGGTCATAAAGTTGAGCATCCACATGGAAATTTGATGCCACCCCTACCCCCAACTCAATATCAGAGTCATTGTTCAAGAGAGCTAATGTCAAAACCAATGTCTTGCGAGTCTGTGAAACCAAAAGATGGTGACTGTAAGCTATTTGGCATCTCACTTATCAGTAGCTCTGTTGCACCAGAGCCTTCTGTATCTCAAAGAAATGTGACAAGCGACACACCTGGTCCAATGCATATAACATCACACCAACAACGAACGGCAGAAAATGATCTGAAATCAGATCACTCAAAGTGCTCAAAACAAACAGATGGTCAAGTTGTCAATGATGACCATGATAAGGCATTGCATACTTCTCATCTGCATCTGAAAGATGTTCAATCCAAATCACATGGTGGTTCTGCTAGGAGTTGCACTAAGGTTCACAAGAAGGGGATTGCACTTGGTAGGTCAGTGGACCTTACTAAGTACAGTGACTATGATGAATTGGTTGCTGAATTGGATCAGCTGTTTGAATTTGGGGGTGAATTAATGTCAACAAAAAAGGATTGGCTTATTGTCTATACTGATAATGAGGGTGACATGATGCTTGTAGGCGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGGAAAATTTATATCTACCCTAAAGAGGAGATTCAGAAAATGAGCCCGGGTACATTGAGTTCGAAAAATGAAGAAAATCAGTCAGCTAGCGAAGGAGAAGTTAAAGGTGAACTGCATCAGAAGTTAAATTCAGACAATGGTCTTGATGCCTGA 2523 0.4633 MASSEVTMKGNCLNHNDGSRNATTEGHSPSTARVVEDAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPPKILCRVINVQLKAEPDTDEVFAQVTLLPEANQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAILTKTIFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDVDSKRWRESKWRCLKVRWDETSNTPRPERVSPWKIEPALAPPALNPLSMPRPKRPRSNAVPSSPGSSVLTREASSKVSVDPLPANGFPRVLQGQEFSTLRGNFAESNEPDTAEKSVGWPPAVDDEKIDVSTSRRYGSESWMSMGRNEPTYSDLLSGFGASGDPSHPSLVDQMTPVAYPARKHSVDHEGKLHVPHPWPVMPSSLSLNLLDSNTKGSAHGSDTAYQARGNLRYTAFGEYPMLHGHKVEHPHGNLMPPLPPTQYQSHCSRELMSKPMSCESVKPKDGDCKLFGISLISSSVAPEPSVSQRNVTSDTPGPMHITSHQQRTAENDLKSDHSKCSKQTDGQVVNDDHDKALHTSHLHLKDVQSKSHGGSARSCTKVHKKGIALGRSVDLTKYSDYDELVAELDQLFEFGGELMSTKKDWLIVYTDNEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSKNEENQSASEGEVKGELHQKLNSDNGLDA. 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01718 840 ProSiteProfiles PB1 domain profile. 716 798 IPR000270 GO:0005515
Seca3g01718 840 FunFam Auxin response factor 311 383 - -
Seca3g01718 840 SUPERFAMILY DNA-binding pseudobarrel domain 144 277 IPR015300 -
Seca3g01718 840 Gene3D - 712 805 - -
Seca3g01718 840 CDD B3_DNA 146 248 IPR003340 GO:0003677
Seca3g01718 840 SMART B3_2 148 250 IPR003340 GO:0003677
Seca3g01718 840 MobiDBLite consensus disorder prediction 640 665 - -
Seca3g01718 840 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 41 805 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca3g01718 840 MobiDBLite consensus disorder prediction 400 415 - -
Seca3g01718 840 Gene3D - 145 250 IPR015300 -
Seca3g01718 840 Pfam B3 DNA binding domain 148 249 IPR003340 GO:0003677
Seca3g01718 840 MobiDBLite consensus disorder prediction 382 430 - -
Seca3g01718 840 ProSiteProfiles B3 DNA-binding domain profile. 148 250 IPR003340 GO:0003677
Seca3g01718 840 MobiDBLite consensus disorder prediction 640 686 - -
Seca3g01718 840 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca3g01718 840 MobiDBLite consensus disorder prediction 818 834 - -
Seca3g01718 840 Gene3D - 311 381 - -
Seca3g01718 840 MobiDBLite consensus disorder prediction 1 31 - -
Seca3g01718 840 MobiDBLite consensus disorder prediction 445 464 - -
Seca3g01718 840 SUPERFAMILY CAD & PB1 domains 718 793 - -
Seca3g01718 840 MobiDBLite consensus disorder prediction 666 686 - -
Seca3g01718 840 Pfam AUX/IAA family 706 803 IPR033389 -
Seca3g01718 840 FunFam Auxin response factor 146 250 - -
Seca3g01718 840 MobiDBLite consensus disorder prediction 804 840 - -
Seca3g01718 840 MobiDBLite consensus disorder prediction 1 30 - -
Seca3g01718 840 FunFam Auxin response factor 711 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01718 Seca-Chr3 29691093 29696485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01718 1 822 B3 DNA Binding Superfamily AT5G62000 64.953 0.0 1079
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca3g01718 AUX_IAA 8.5e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01718 - - gmx:100797082 1461.05