Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01717 ATGATGTCCAGAATAAACAACGCTTCTTGGATGGAAGAAAGAGAGGACGAAAACTCTGCTTCTGCTTCTTGGATCAGAAACTCCAAGCCAAACACTCCTGTTGCCTCTGCTTTTGTTGAAAACAGAGAAGACTTAGGTTCTCTCTGTGCTTTGAAACCCATGCTTGAAGTTGATGAGGAATGGTACATGAGGGACATGGCTTTCGATAACGTTTTGCTCCAAACAGTGGACTCTTCCTCTTCATGCTCTCCTTCTTCCTCTGTCTTCAACACCCTCGACCCTTCATCATCACAGGTGCAGTATTTTCTGCCTCCAAATCCAAAACCACCCACTTTATCTTCTCTTCTCAACCCTTTTGAAATGGGTTGCGAGGTGGGGTTTCTTGAGCCTCAAGCTTCCTCCACTGCTTCTCCCCTTCTGGGTACTGGCTTCGCTGACTTGAGCTCAAAACCACAGTTAGCACTTCCTAACCTTGGTTCCGGCACACAGTTACCGACAACGAACGTGCCCCATTTGCCCCAAAGTAACACTGGCTTTGTGGGGTTTCAGAATTTGGAGGAAGGTTCTGGAAAGCCTCTGTTTTTGAACAGGTCCAAGATTTTGAGACCCCTTGAATCGTTGCCTCCATCTGGAGCACAACCCACTCTGTTTCAGAAAAGAGCTGCACTTAGAAAAAACATGGGATCCGAAGGTGGTGGTGTTGCAAGTAGGGGTAAGTGTGAAATTGGGGGAGGGAGTGATAAGAAAAGGAAGATGAGTAGTGGGGAGGAGATGGAAGATGCAAGTTTTGATGGGTCAGGGTTGAACTATGATTCTGATGACTTGACTGAGAGTAACAATAATAAGATGGAAGAGAATAATGGCAAGAATTGTGGAAATACCTCCAATGGCAACAGCACAGTCACTGGTGTCGATCACAAAGGGAAGAAGAAGGGAATGCCAGCTAAGAATTTGATGGCTGAACGCCGTCGTAGGAAGAAGCTCAATGATAGACTCTATATGCTGAGGTCTGTTGTTCCAAAGATTAGCAAAGTAAGAGTCTTTTATTTTATTTTTTTCAGCCTAATTGCACTTACTTTTATTCAATTTCTTAGAGTGTTCATCTTCAGCCAGTTTGATTTTAATTTTGATCTTTTTGGTTGA 1143 0.4401 MMSRINNASWMEEREDENSASASWIRNSKPNTPVASAFVENREDLGSLCALKPMLEVDEEWYMRDMAFDNVLLQTVDSSSSCSPSSSVFNTLDPSSSQVQYFLPPNPKPPTLSSLLNPFEMGCEVGFLEPQASSTASPLLGTGFADLSSKPQLALPNLGSGTQLPTTNVPHLPQSNTGFVGFQNLEEGSGKPLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNMGSEGGGVASRGKCEIGGGSDKKRKMSSGEEMEDASFDGSGLNYDSDDLTESNNNKMEENNGKNCGNTSNGNSTVTGVDHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKVRVFYFIFFSLIALTFIQFLRVFIFSQFDFNFDLFG. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01717 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 364 IPR011598 GO:0046983
Seca3g01717 380 Gene3D - 306 360 IPR036638 GO:0046983
Seca3g01717 380 MobiDBLite consensus disorder prediction 242 258 - -
Seca3g01717 380 MobiDBLite consensus disorder prediction 269 303 - -
Seca3g01717 380 MobiDBLite consensus disorder prediction 227 312 - -
Seca3g01717 380 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 195 345 - -
Seca3g01717 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 345 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01717 Seca-Chr3 29687278 29690710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01717 69 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 42.857 2.57e-35 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g01717 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01717 - - cave:132174704 348.206