Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01714 ATGGCAAAAGATCAGCAAAAACAGAACCCTGCAGCAAATTCCAATTCTGGGCAAAACCAAAACCAGGGTAAAGGCGAAGAAAAGCAATTGGAACTGGAAAACGAGGAGGCTAAGACCCCTTTGCCCCTCAGTGTTACTTCCCGGGCTTTGTACATGTTGGGAGACATCACAGCAGGGCCTGCGTTTAAGTTCACGCAATGGCTCCAATTAGTTCGTAAACGCACTTCTAACTATCGCTCCTCTGGCTTCCCTCACCGTCCTTCCACCATGCCTTCTAGGTTTCTTACTAGAGAATCTACTAGGGATGCAAAAATTGAGCAGCTTCCAGAGCAAACAGAAATTAGTTTGTGGGAGAGACTTGGTAAAGCAGAAATGTTGGACATTGAATCGAGCTCCTTTTCTTGGGACAGGCTCTCTTCACTTCACCATACTGAGCACACTTGCAGCAATGAACATTCTGAGGATGAAATGAATAGGGCACTTGAGGTAACAGTAAATTCTGGAGGGGTTGTCTTCTTTGCCTTTTTCAATGGCCTTGGGACTGATGATGCTTTTCCAAAAGAATCAGCAGCTGTTATAAAGATATCATCCTCAAGAATGGCAACACAATCTGAACGCCTTGGTTATGAATTTGCCAAGTGGTTGGGAGTCCAAACTCCACAGATGCAGGCTAGAGTCATTCACAATACCAGTTCTGAATGGCTCCAAATAAAGAAAGCTGCAGAAAAAGTGAGAGATGCAGCAAATTCTGCGGGTGATGAAATTGGTGAAATGACAAGTTTAGAACTTTTGGAAGCACTTGAGCTTAGCCGATGTCTCTTGTTTATGAGTTATGTACATGGTTCACCTTTGCTTGAAAGCTTTAGCGCATTTGAATCCCAGGACTCTGCAGAGAGAATATCAGCAGCCCTTGGCAGGATAATGATGCTTGATCTTGTCATCAGAAATGAAGATAGGCTTCCTTGCCGTCAACTTAGATGGCGTGGGAACTCTGCAAATTTGTTATTGGCTGAGAAGATGATCTCTGTGAATACAGATACACTAGGAGAAGCTTTTGATTCTGCAATGAACCAATATGGACCGAGGGTGATCAGGGCACTTAAGAAAGAAAGAAGGTCAGCTTCAGTAGATAGCAGATTGAGTTCTCAAAATCTTGGAATGGAATCACAAGGTTCTTATCTTTCAGAGATCAGGGAATCATTAACATCCACTGACATGAGCCTTAAAAGTCAAACATCACGAGAATCTTTGTTTACTGACTTCAACATTGTGGCTATTGACTCTGGTGTTCCTCGCCGACCCCCTGCTGGAAAACGTGCAGATGATCAGGTCAATTATCCTAAGTTGGTTGAGTTACTACTAAATAGCTCTGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGATTAGGTTGTCCCTCCCCAGAAGACATAAATACAACAACTGATGTACATGCAAGTGATGCAACATCAGTGGTTCATGAGTTCCGTAGTGGTTTCCGTGCTGCCCTTAGGGATCTGCAGGGATTCCATTTATTCCTACTTACACTTAGCCAAAAACTTGACAACTTGTTACGATCAATTATAAGCAAAATATCATTGGGGGAGTCTGAAAAAGAGGATTCAGTGGTTCCTGACTCACCTTCACCGATTGCTGCTGGTAGTTGTCCCTCACCAATAAGCAAGGAGAGGTTTTCTAATGATAGCCATCAAGATTTTAGTGATTCAGAATCACAGAGAACTGCTCCAAGGGCATCGTCATCTTCTAGCAATAGAGATTGCTGTGACTCTGCTTCTTCTGTGTCAAGAGAAGGTTCACATGGAAAGTTCTCTAAAGGAAGTGGGGAACCACTTCATGGTTTCCGCATGACAGCTAAACTCCGTGACTTCCATAAATTTGCTAAGGTTGACACAGAATCTTATAAAGAATTGGAACAATGGAACGAAATGCTTAAAAATGATGTTATCAAGTTGTGCCAAGAGAACAATTTCAATACAGGATTTTTTGAGGGCAGTGATAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTGGAGCATATCCTTGAGAGGATTGTGTTGATATCTGAGGCTGCAAATACAGAGAAACCATCTGCTGTTACAAATAGTCTGTTCATTGGCGGAGCACTAGCTGCAAGATCTATATACACACTGCAACACTTGGGAATCACTCATATTTTGTGTTTGTGTACTAACGAAATTGGACAGTCAGATTCTCAGTTTCCTGATCTATTCACATACAAAAATTTCTCCGTGTGTGACAATGAGGATTCTAACATCAGCAGCATATTTGATGAAGCTTGTGATTTTATAGATTATGTTGAGCAAACAGGTCAGAGAGTTTTAGTTCATTGCTTCGAGGGAAAAAGCAGAAGTGTCACTTTGGTCCTTGCTTACTTGATGCTCAGGAAGAAGTTCACCTTATTAGAAGCATGGAATGCTCTGAAACAGGTTCACCGTCGAGCACAGCCCAATGATGGTTTTGCAAAGATCTTACTGGAGCTGGATCAGAAACTGCATGGGAAGGTTTCAATGGAATGGCAACAGCGGAAACCAATGATGAAAATTTGCCCTATATGTGGCAAGAATGCTGGACTAAGCAGCAGCTCGCTTAAGCTCCATCTTCAGAAATCACATAGAAAGCTATCATCAGGGAGCGTAGATAGTGCCATGACAATGGAGATCCAAAAGGCATTAACAGCATTGAAGATTAGCCGTGGTGGGAGTGTCAGCCCCATACAAAGGAACAAGTCTCATTCAATGATAGATTAA 2805 0.4232 MAKDQQKQNPAANSNSGQNQNQGKGEEKQLELENEEAKTPLPLSVTSRALYMLGDITAGPAFKFTQWLQLVRKRTSNYRSSGFPHRPSTMPSRFLTRESTRDAKIEQLPEQTEISLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTCSNEHSEDEMNRALEVTVNSGGVVFFAFFNGLGTDDAFPKESAAVIKISSSRMATQSERLGYEFAKWLGVQTPQMQARVIHNTSSEWLQIKKAAEKVRDAANSAGDEIGEMTSLELLEALELSRCLLFMSYVHGSPLLESFSAFESQDSAERISAALGRIMMLDLVIRNEDRLPCRQLRWRGNSANLLLAEKMISVNTDTLGEAFDSAMNQYGPRVIRALKKERRSASVDSRLSSQNLGMESQGSYLSEIRESLTSTDMSLKSQTSRESLFTDFNIVAIDSGVPRRPPAGKRADDQVNYPKLVELLLNSSEFSSNLLHDITGGRLGCPSPEDINTTTDVHASDATSVVHEFRSGFRAALRDLQGFHLFLLTLSQKLDNLLRSIISKISLGESEKEDSVVPDSPSPIAAGSCPSPISKERFSNDSHQDFSDSESQRTAPRASSSSSNRDCCDSASSVSREGSHGKFSKGSGEPLHGFRMTAKLRDFHKFAKVDTESYKELEQWNEMLKNDVIKLCQENNFNTGFFEGSDNNTVVDAYELKVRLEHILERIVLISEAANTEKPSAVTNSLFIGGALAARSIYTLQHLGITHILCLCTNEIGQSDSQFPDLFTYKNFSVCDNEDSNISSIFDEACDFIDYVEQTGQRVLVHCFEGKSRSVTLVLAYLMLRKKFTLLEAWNALKQVHRRAQPNDGFAKILLELDQKLHGKVSMEWQQRKPMMKICPICGKNAGLSSSSLKLHLQKSHRKLSSGSVDSAMTMEIQKALTALKISRGGSVSPIQRNKSHSMID. 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01714 934 Gene3D Protein tyrosine phosphatase superfamily 689 862 IPR029021 -
Seca3g01714 934 Pfam Dual specificity phosphatase, catalytic domain 722 848 IPR000340 GO:0008138|GO:0016311
Seca3g01714 934 SMART dsp_5 707 849 IPR020422 GO:0006470|GO:0008138
Seca3g01714 934 MobiDBLite consensus disorder prediction 580 609 - -
Seca3g01714 934 MobiDBLite consensus disorder prediction 1 39 - -
Seca3g01714 934 MobiDBLite consensus disorder prediction 539 617 - -
Seca3g01714 934 Gene3D - 285 416 IPR036940 -
Seca3g01714 934 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 22 930 IPR035010 GO:0004721|GO:0009737|GO:0043622
Seca3g01714 934 FunFam Dual specificity protein phosphatase PHS1 679 853 - -
Seca3g01714 934 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 706 852 IPR029021 -
Seca3g01714 934 Pfam Actin-fragmin kinase, catalytic 113 409 IPR015275 -
Seca3g01714 934 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 776 828 IPR000387 GO:0016311|GO:0016791
Seca3g01714 934 ProSiteProfiles Dual specificity protein phosphatase domain profile. 707 852 IPR020422 GO:0006470|GO:0008138
Seca3g01714 934 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g01714 934 CDD DSP 708 845 - -
Seca3g01714 934 SUPERFAMILY Protein kinase-like (PK-like) 66 443 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01714 Seca-Chr3 29602162 29608921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01714 21 918 Protein tyrosine phosphatase (PTP) family AT5G23720 64.325 0.0 1120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01714 K14165 - gmx:102661225 1396.72