Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01701 ATGAAAGAATCAACGGAATCGGACCCCATCCCCCTCCTGTGTTCCCTCCTCGATCAGGAAATCCCCACCGTTCACCACCTCAAAGGCAAGTGGTCCCTCGCCCGAGTCAAACTCACCCACCTCCAAACCCACCTCGCCGATTTCTCCGCTGAATACCCCAAATCCTCCGCATCCAACCCTCTCTCCCTCGACCTTCTCCATTCCCTCTCTCACACCCTCCACGACGCCGTTTCCCTCGCTCGCCAATGCCACTCCCCCAACTTACCCCGCGGCAAACTCCAAACCCAAAGCGACCTTGACTCCCTCCTCGCCACACTCGATCGCCACGTCACCGACTGCGACATCCTCTTCCGCAGCGGCGTCCTCCTCGAAACTAACCCTGCTTCTTCTAAAAGAGAAGCCGTTCGATCCGCTTCTAGAAACTTCATAACCCGTTTGCAAATCGGGTCACCCGACTCCAGAGCCTCCGCCATGGACTCCCTCCTCGCTCTCCTCCACGAGGACGACAAGAACGTCACCATAGCCGTCGCTCAGGGCGTGGTCCCTGTCCTCGTTCGCCTACTCGATTCCTCCTCCGAGATGAAGGAGAAAACCGTCGCCGCCATTTCTAGAGTCTCCACCGTGGAAAGCGGCAAGAACGTGCTCGTCGCGGAGGGTTTGTTGCTGCTGAATCACTTGCTTAGGGTTCTTGACTCTGGGAGTGGGTTAGCCATGGAGAAGGCTTGCGTGGCGCTTCAAGCGTTGAGTTTCACCAAGGACAACGCTAGAGCCATTGGATCCAGAGGTGGAATCTCATCGCTGTTAGGGATTTGCCAGGCTGGCACACCTGGCTCACAAGCTTCTGCGGCGGCGGTTTTGAGGAATCTTGCAAAGTTCGCTGAAATCAGACAGAATTTCACGGAGGAGAATGCGGTTGTTGTTCTCTTGGCTGTGGCTTCTTCCGGAACTGTTTTGGCTCGGGAAAACGCGATAGGGTGTTTGGCTAATTTGATTTCGGAGGATGAAAATTTGAGGGTTTCGGTGGTTAAAGAAGGTGGAGTTGAATGTTTGAGGAATTTCTGGGATTCAGGTCCACAGGTTCAGAGTCTTGAGGTTGCGGTTGAGGTCTTGAGGCATTTAGCTTCGAGTGCCCCTATTGCTGAGGTTCTCGTTACTGAAGGGTTCGTGGAGAGGGTGATGGGGGTGCTGAATTGTGAGGTTTTGGCAGTGAGAATTGCGGCGGCCAGAGCTGTTTATGCTTTGGGGTTGAGCAGTGGTAAAACAAGGAAGGAAATGGGGGAGTGTGGGTGTGTTCCCCTTCTGATTAAGATGTTGGATGGGAAAGGTGTGGAGGAGAAAGAAGCAGCTGCGATGGCATTGTCGGTGCTTCTGCTTCACCCTGGGAATAGGAGGATTTTCAGAAAGGATGAGAGGGGAATAGTGAGTGCTGTCCATCTCTTGAACCCTTCCTTGCACAATATGGATAAGCAATACCCTGTTTCGTTGCTCCACTCGCTCTTGCATTCCAAGAGTTGCAAGAAACAAATGGTGGCAGCTGGGGCTTGTGTATATACGCAGAAGCTTGTTGAAATGGATGTCCCTGGGTCCAAGAAACTATTGGAAGGCCTTGGTCGTGGTAAGATATGGGGAGTTTTTGCAAGACCCTAG 1647 0.5313 MKESTESDPIPLLCSLLDQEIPTVHHLKGKWSLARVKLTHLQTHLADFSAEYPKSSASNPLSLDLLHSLSHTLHDAVSLARQCHSPNLPRGKLQTQSDLDSLLATLDRHVTDCDILFRSGVLLETNPASSKREAVRSASRNFITRLQIGSPDSRASAMDSLLALLHEDDKNVTIAVAQGVVPVLVRLLDSSSEMKEKTVAAISRVSTVESGKNVLVAEGLLLLNHLLRVLDSGSGLAMEKACVALQALSFTKDNARAIGSRGGISSLLGICQAGTPGSQASAAAVLRNLAKFAEIRQNFTEENAVVVLLAVASSGTVLARENAIGCLANLISEDENLRVSVVKEGGVECLRNFWDSGPQVQSLEVAVEVLRHLASSAPIAEVLVTEGFVERVMGVLNCEVLAVRIAAARAVYALGLSSGKTRKEMGECGCVPLLIKMLDGKGVEEKEAAAMALSVLLLHPGNRRIFRKDERGIVSAVHLLNPSLHNMDKQYPVSLLHSLLHSKSCKKQMVAAGACVYTQKLVEMDVPGSKKLLEGLGRGKIWGVFARP. 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01701 548 SMART arm_5 292 332 IPR000225 GO:0005515
Seca3g01701 548 SMART arm_5 417 458 IPR000225 GO:0005515
Seca3g01701 548 SMART arm_5 376 416 IPR000225 GO:0005515
Seca3g01701 548 SMART arm_5 251 291 IPR000225 GO:0005515
Seca3g01701 548 SMART arm_5 334 375 IPR000225 GO:0005515
Seca3g01701 548 SMART arm_5 168 207 IPR000225 GO:0005515
Seca3g01701 548 Gene3D - 359 524 IPR011989 -
Seca3g01701 548 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 179 220 IPR000225 GO:0005515
Seca3g01701 548 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 546 - -
Seca3g01701 548 SUPERFAMILY ARM repeat 142 503 IPR016024 -
Seca3g01701 548 Gene3D - 140 358 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01701 Seca-Chr3 29279283 29280929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01701 74 456 U-box Gene Family AT2G23140 25.065 1.56e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01701 - - vum:124844092 776.933