Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01699 ATGGGTTGCGTGCTCGGGACACCGGCTGGTGACGGAGCTCAGAGCCGTCGCCGGAACGGCCAGCGTAACGATGCTTCTGACGCAGGTAATAATGTCGTTAGGGTTCGGGAGAGTCGACTAACGAATCGCCACACCGGCGATTTTCCAGGGACTCTTCCGGCGCCGGAGCGCCGGAAACCTAGGCTCGATCCGTGCGCGGTGAATCAACAAGGTTGGCCGTCTTGGTTGATGGCCGTCGCCGGCGATGCAATCGGCGATTGGACTCCTCGCCGCGCCAACACGTTCGAGAAGCTTGCTAAGATTGGGCAAGGGACGTATAGCAATGTGTATAAGGCTAAAGACCTTCTTACGGGGAAGATTGTGGCTTTGAAGAAAGTTAGATTTGATAATTTGGAGCCAGAGAGTGTGAAGTTCATGGCAAGGGAGATACTTGTTCTGCGGAGGCTTGATCACCCCAATGTTGTAAAGCTTGAAGGCTTGGTTACTTCTAGAATGTCATGCAGTCTTTACTTGGTATTTGAGTATATGGAGCATGATCTTGCAGGGCTTGCAGCTGGCCAAGGTGTTAAGTTCACTGAATCTCAGGTCAAATGCTTTATGAAGCAATTACTTTCTGGTCTTGAGCATTGCCACAGTCGAGGTGTATTGCACCGTGATATCAAGGGTTCCAATCTGCTTATTGACAATGAAGGAATCCTTAAAATTGCAGATTTTGGACTGGCAACTTTCTATGACCCTAAGCAAAAGCAGCCCATGACAAGCAGAGTTGTGACCCTTTGGTATCGCCCCCCTGAGCTTCTTCTTGGGGCTACATTATATGGTGTAGGTATTGACCTTTGGAGTGCTGGTTGCATCTTGGCAGAGCTGCTTGCTGGGAAGCCAATCATGCCTGGCCGCACAGAGGTTGAACAACTGCACAAAATATTTAAGTTGTGTGGCTCTCCATCTGAGGAATATTGGAAGAAGTATAGATTGCCAAATGCTACAATCTTTAAGCCACAGCAGCCATATAAACGTAGTATCTCAGAAACATTCAAGGATTTTCCTCCATCTTCACTGCCTCTAATTGAAACTCTTCTTGCAATAGATCCTGATGATCGTGGCACTGCCTCAGCTGCTCTAAATAGTGAAGTGAGTGATCCCTATGGATTAACCTTATATTTAGGATGTAACACATTTCACATCTGTTTTTTTTTATCTTCAGTTCTTTACCACTGA 1218 0.4721 MGCVLGTPAGDGAQSRRRNGQRNDASDAGNNVVRVRESRLTNRHTGDFPGTLPAPERRKPRLDPCAVNQQGWPSWLMAVAGDAIGDWTPRRANTFEKLAKIGQGTYSNVYKAKDLLTGKIVALKKVRFDNLEPESVKFMAREILVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTESQVKCFMKQLLSGLEHCHSRGVLHRDIKGSNLLIDNEGILKIADFGLATFYDPKQKQPMTSRVVTLWYRPPELLLGATLYGVGIDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKYRLPNATIFKPQQPYKRSISETFKDFPPSSLPLIETLLAIDPDDRGTASAALNSEVSDPYGLTLYLGCNTFHICFFLSSVLYH. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01699 405 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Seca3g01699 405 SMART serkin_6 95 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01699 405 MobiDBLite consensus disorder prediction 1 63 - -
Seca3g01699 405 CDD STKc_CDK9_like 95 377 - -
Seca3g01699 405 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Seca3g01699 405 Gene3D Phosphorylase Kinase; domain 1 82 177 - -
Seca3g01699 405 FunFam probable serine/threonine-protein kinase At1g54610 178 391 - -
Seca3g01699 405 Gene3D Transferase(Phosphotransferase) domain 1 178 383 - -
Seca3g01699 405 Pfam Protein kinase domain 95 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01699 405 ProSiteProfiles Protein kinase domain profile. 95 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01699 405 SUPERFAMILY Protein kinase-like (PK-like) 89 376 IPR011009 -
Seca3g01699 405 FunFam probable serine/threonine-protein kinase At1g54610 82 177 - -
Seca3g01699 405 PANTHER CELL DIVISION PROTEIN KINASE 93 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01699 Seca-Chr3 29242895 29247639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01699 87 393 Core Cell Cycle Gene Families AT5G10270 51.212 2.94e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca3g01699 Pkinase 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01699 K08819 - gmx:100793033 701.434