Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01695 ATGGAAAAATTGAATTTTGTTAAAAATGGAGTATGCAGATTGCCTCCTGGTTTTCGTTTTCAGCCAACAGATGAAGAGCTTGTCTTTCAATACTTGAAATGTAAGATCTTCTCATGCCAATTGCCTGCTTCAATCATTCCTGAGATCAATGTCTGCAAGTACGATCCTTGGGATTTGCCAGGTTTAGGAAACTGTTATCAGCAAGAGAGGTACTTTTTCAGCTCTAAGGAAACTAAGTATCGAAATGGCAATCGTATGAACAGAACAACCAACTCTGGCTATTGGAAGGCAACAGGATCAGACAAAAAAATTTCACCATCAACAATAACTTGTGATGGTATTGCAGGGATAAGAAAAACTCTGGTATTCTATGAAGGGAAATCTCCAAATGGGTCTCGAACTGATTGGATCATGCATGAATATCGCCTTGTCAGTATAGAAACTACTGCTAGCAATTCATCCCAGAACTATGTAAACGAGATAGGGGATTGGGTACTCTGTCGCATATTCATGAAGAAAAGAAGTATAGAAATTGATGACAACACTGCTACCATGCTGAAGAAGAAAAATAGAGTGATGAATGTTCAGGGGACTCACCCAAGATTCTTTGATTTTATGAGGGTATACAAGTCAACTCCGGGTCCTATCCATTTTTCTAATTCTATCACATCTTCATCTTGTTCAAGTTCCAGTGACATTTTAGAGATTTCTTCTTCAGACCATGAAGAAACAATCGGCTATGCTGATTATTAA 753 0.3811 MEKLNFVKNGVCRLPPGFRFQPTDEELVFQYLKCKIFSCQLPASIIPEINVCKYDPWDLPGLGNCYQQERYFFSSKETKYRNGNRMNRTTNSGYWKATGSDKKISPSTITCDGIAGIRKTLVFYEGKSPNGSRTDWIMHEYRLVSIETTASNSSQNYVNEIGDWVLCRIFMKKRSIEIDDNTATMLKKKNRVMNVQGTHPRFFDFMRVYKSTPGPIHFSNSITSSSCSSSSDILEISSSDHEETIGYADY. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01695 250 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Seca3g01695 250 Pfam No apical meristem (NAM) protein 15 143 IPR003441 GO:0003677|GO:0006355
Seca3g01695 250 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Seca3g01695 250 SUPERFAMILY NAC domain 10 172 IPR036093 GO:0003677|GO:0006355
Seca3g01695 250 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01695 Seca-Chr3 29207060 29208901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01695 1 244 NAC Transcription Factor Family AT5G13180 50.579 4.07e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g01695 NAM 7.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01695 - - aprc:113868555 363.614