Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01665 ATGGAGAAACACCAAGTGATATTCCCTACATCATCAGCCCCTTTTCCATTTGATTGTGAGGATGCTTATATTTCTAATGTTCATGATGAGAAGGAAGACTTTGCAATTTCAGCGCAGAAAGAAAGTGACATAGAGATCAAGCAGCACAGATATGCATTTCAAACAAGGAGTCCAGTTGATGTACTGGATGATGGAAGTTACTATAGGTGCTCTCATCGAGGTTGCAATGTCAAAAAACAAATCCAACGCAATTCACAAGATGAACAGATCGTGGTAACAACCTACGAAGGGATGCATACACACCCTGTGGATAAGTCAGCTGAAAGCTTCGACCAGATCTTAGGAAACCTGCTAGTAAGCAACCTACTCTGTAATGCACCTCCAGTGTCGGAATAG 396 0.4192 MEKHQVIFPTSSAPFPFDCEDAYISNVHDEKEDFAISAQKESDIEIKQHRYAFQTRSPVDVLDDGSYYRCSHRGCNVKKQIQRNSQDEQIVVTTYEGMHTHPVDKSAESFDQILGNLLVSNLLCNAPPVSE. 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01665 131 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 106 IPR044810 GO:0003700
Seca3g01665 131 SMART WRKY_cls 62 103 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01665 131 ProSiteProfiles WRKY domain profile. 66 104 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01665 131 Gene3D WRKY domain 39 104 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca3g01665 131 Pfam WRKY DNA -binding domain 66 102 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca3g01665 131 SUPERFAMILY WRKY DNA-binding domain 65 103 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01665 Seca-Chr3 28703369 28704639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01665 50 119 WRKY Transcription Factor Family AT5G13080 51.136 2.55e-27 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca3g01665 WRKY 4.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01665 - - gmx:100796070 175.252