Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01652 ATGAGAAACAGTATAAAAACCTCTCACCATCTTGGCCAAACATGCACCGCACAGAGTAAGCTTTGGAACTCTGATCGGAGCCCAATTCTGTCAACTTTTGGTTCCAAAATCATTCCTAAAACACAAGGAACTTCCTCATCTCAATTTCCTGTTGCGCTTCATTCCTGTTTCTTCAGGGTCCTCGGTGTGCAACCCTTAGCCAATGACGAAACAATTCGAAGAGGGTATAGAAAACTGGCTCTCACTCTGCACCCTGATAAAAATAAATCAGTAGGTGCGGATGGGGCATTTAATCTTATAACACAAGCTTGGAGTTTATTATCTGATAAAGCCAAGAGAGCCAGCTTTGACCAACATTACAAATTATGGGGTATATATCAGGGAGTTCCAGGTGGAAAGGCTTATGTGCCAGCTAATCAGAATGGTTTCTTTAACCTCAATACTGCTAATTGGAAGGACAGAGATCATAGAAGTGCTGCTCATCCCAATCCTATGCCAGCTAGTCAGAATGGTTTCTATAACCTCAATACTGCTAATTGGAAGGACAGAGATGATAGGAGTGCTGGTCATCCCAATCCTACTTCAGGATCTCCTTTGTCATTGAAACGGACATTCTGGACTATGTGCAGTTCCTGCAGGACACAGTTTGAGTATGAACTTGTTTATTTCAACCAACATCTTGTCTGCACCAGCTGCAATAAACCATTTTTTGCTTTTGAGGCCCCACCCCCATCTGCATTCGGAAATGCTTCCTCCACTTCAAGAATTTCTCAAATGAAGCAACATAACTTCAACCCAACCAGAATGGAAAGAAACTACCATGTTTCAGGAAGGACACCAATGTCTGCTGTCAACTCATCACTCAGGTCAGGTCCTTTCTCTATTCCCAGTGGTATTTCCAGTGGACTGACATCAGCTTCCGCTGCTGCTGAATCTCCTGGTTTTCTTAGGATGTCATCCGAGAATTTGAAAAGAAAGCATGAAGATTCACAACCTGTCATGAGGGAGGGGATGCATTTTGTGAAAACTCATGCGGTTGAGAGAGCTGTTGCTGGTTCAGCATATCATGCCCCTTGTTTTGGTTCAAATTCTGTTCTGAAAGGAGATGGATCAAGGAAAAAAAGGCGCACAGATGAACATAAAGTTGATAGTGATAGAAGGGATATGGAAACTGAAATAGCATCTCAGAAGGATAGTTTTTATACAGGAAGGGTTAATTCTGCTGGAACTTATAAACGTAATGGTATTAGGGATGTATCACAGCTGCAAATGAAGAACCTCTTGATGGAGAAGGCTCGGAATGAGATTCGCAAAAAGCTTGATGAATGGAATGCTGCTGCTGCTGCATCAAAGAATTTAGACAAGTCAAAGAATACTGATACAGAGATCAGACTTAAGGACAACGAAGGGGCTATAAATGGTGTGAAGAATACACAAGAATTTGTTGATTCTGAGACCATTGACAAAAAGTGTTTGTCTGCTGATTCAGAGGTTGCTGATTCTCTCTCCATGAGTGTTCCAGACCCAGATTTCCATGATTTCGATGGAGACCGTATTGAAAACACTTTTGGGGAAAACCAGGTGTGGGCTGTATATGATGATGATGATGGCATGCCTCGCTACTATGCCTTAATCCATGATGTAATCTCAAAAAGTCCTTTCAAAATGAGGATTAGCTGGCTGAACTCTAAAACCAATGATGAATTGGCCCCAATAAAGTGGGTCAGTTATGGCTTTCCAAAGACCTCTGGGGATTTCCATATAGGCAAGCGTGTGACCTATAGTACTCTCAATTCCTTCTCGCACAGGATTAAGTGGACAAAAGGTTCAAGAGGGGCTGTCCATATATATCCAAAGAAAGGGGAGGTTTGGGCTCTGTACCGGAACTGGTCCCTTGATTGGAATGAATTTACTGAAGATGAAATCATACACAAGTATGACATGGTGGAAGTGCTGGAAGACTATAATGAAGAGCAAGGTGTGAATGTTGCCCCACTTGTCAAGGTTGCAGGTTTCAAGACAGTATTCTGCCAGAATGCTGATCCTAGAAAAATCAGGAATATTCCAAAGGCAGAGATGTTTCGTTTCTCACATCAGGTACCTTCATACTTGCTCACTGGTGAAGAATGTCAAAATGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCCACGCCTATGGAACTTCTTCAGGCGACCACTGAAGCTCCAAAGCAAGAAATAGAAATGACAGTTGAAAAGTCTTTAAAAGATGAATTGAGGCACAAGGAGAATTCCAGGGAGAAAGATTCTAAAAACCATGTGGCTGAACTACAGGCGAAGAAGGAAAGTAGGCCTGAGATTTTGTTTGTATATCAACGGAAACGTCTAAAGAAAAAAGGAGTGCTATGA 2391 0.422 MRNSIKTSHHLGQTCTAQSKLWNSDRSPILSTFGSKIIPKTQGTSSSQFPVALHSCFFRVLGVQPLANDETIRRGYRKLALTLHPDKNKSVGADGAFNLITQAWSLLSDKAKRASFDQHYKLWGIYQGVPGGKAYVPANQNGFFNLNTANWKDRDHRSAAHPNPMPASQNGFYNLNTANWKDRDDRSAGHPNPTSGSPLSLKRTFWTMCSSCRTQFEYELVYFNQHLVCTSCNKPFFAFEAPPPSAFGNASSTSRISQMKQHNFNPTRMERNYHVSGRTPMSAVNSSLRSGPFSIPSGISSGLTSASAAAESPGFLRMSSENLKRKHEDSQPVMREGMHFVKTHAVERAVAGSAYHAPCFGSNSVLKGDGSRKKRRTDEHKVDSDRRDMETEIASQKDSFYTGRVNSAGTYKRNGIRDVSQLQMKNLLMEKARNEIRKKLDEWNAAAAASKNLDKSKNTDTEIRLKDNEGAINGVKNTQEFVDSETIDKKCLSADSEVADSLSMSVPDPDFHDFDGDRIENTFGENQVWAVYDDDDGMPRYYALIHDVISKSPFKMRISWLNSKTNDELAPIKWVSYGFPKTSGDFHIGKRVTYSTLNSFSHRIKWTKGSRGAVHIYPKKGEVWALYRNWSLDWNEFTEDEIIHKYDMVEVLEDYNEEQGVNVAPLVKVAGFKTVFCQNADPRKIRNIPKAEMFRFSHQVPSYLLTGEECQNAPKGCLELDPAATPMELLQATTEAPKQEIEMTVEKSLKDELRHKENSREKDSKNHVAELQAKKESRPEILFVYQRKRLKKKGVL. 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01652 796 PANTHER BNAC03G44070D PROTEIN 57 726 - -
Seca3g01652 796 ProSiteProfiles dnaJ domain profile. 56 120 IPR001623 -
Seca3g01652 796 CDD DnaJ 56 109 IPR001623 -
Seca3g01652 796 Pfam DnaJ domain 57 117 IPR001623 -
Seca3g01652 796 Pfam Domain of unknown function (DUF3444) 502 709 IPR024593 -
Seca3g01652 796 Gene3D DnaJ domain 54 160 IPR036869 -
Seca3g01652 796 ProSitePatterns Nt-dnaJ domain signature. 97 116 IPR018253 -
Seca3g01652 796 MobiDBLite consensus disorder prediction 368 389 - -
Seca3g01652 796 Coils Coil 422 442 - -
Seca3g01652 796 MobiDBLite consensus disorder prediction 753 773 - -
Seca3g01652 796 MobiDBLite consensus disorder prediction 362 389 - -
Seca3g01652 796 SUPERFAMILY Chaperone J-domain 56 144 IPR036869 -
Seca3g01652 796 PRINTS DnaJ domain signature 58 76 IPR001623 -
Seca3g01652 796 PRINTS DnaJ domain signature 92 112 IPR001623 -
Seca3g01652 796 PRINTS DnaJ domain signature 76 91 IPR001623 -
Seca3g01652 796 SMART dnaj_3 55 112 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01652 Seca-Chr3 28482731 28486526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01652 57 244 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT5G64360 28.571 1.65e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01652 - - gmx:100797672 932.939