Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01651 ATGGAGAACAACCAGCAACCGCAATCGGCGGCGTCCTATCCAACTCAACAACCACCACCGCCGGCGGCTGCTGCTGCTGCTCCATTCCATCACCTTTTGCAGCAGCAGCAGCAGCAGCTGCAGATGTTCTGGACGTACCAGCGTCAGGAAATCGAGCACGTCAACGATTTCAAGAACCACCAGCTCCCCTTGGCTCGCATCAAGAAGATAATGAAAGCCGACGAAGACGTCCGCATGATCTCCGCTGAGGCCCCAATTCTGTTCGCCAAGGCCTGCGAGCTCTTCATCCTTGAACTCACTATCAGGTCATGGCTCCATGCCGAGGAGAACAAGCGCCGAACCCTACAGAAGAACGATATCGCTGCTGCAATCACTCGCACCGACATTTTCGACTTCCTTGTTGATATCGTCCCACGCGACGAGATCAGGGATGAGGCTTCCATCGTCGGCGCCGCCGCCGCCGCCGCTGCCAGCGGCGTTCCTTATTACTACCCTCCCATGGGCCAGCCCGCTGGCATGATGATTGGACGCCCTGCCGTTGATCCTGCCACCGGCGTTTACGTCCAGCCACCCTCCCAGGCCTGGCAGTCCGTCTGGCAGACCGCCGCCGAGGATGCCTCTTACGGCAACGCCGGCACCAGTGGTCAGCCCAATCTGGATGGCCAGAGGCTGAATGACTATTAA 684 0.5892 MENNQQPQSAASYPTQQPPPPAAAAAAPFHHLLQQQQQQLQMFWTYQRQEIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIRDEASIVGAAAAAAASGVPYYYPPMGQPAGMMIGRPAVDPATGVYVQPPSQAWQSVWQTAAEDASYGNAGTSGQPNLDGQRLNDY. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01651 227 MobiDBLite consensus disorder prediction 206 227 - -
Seca3g01651 227 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 161 - -
Seca3g01651 227 Gene3D Histone, subunit A 27 139 IPR009072 GO:0046982
Seca3g01651 227 Pfam Core histone H2A/H2B/H3/H4 3 124 IPR007125 GO:0003677
Seca3g01651 227 SUPERFAMILY Histone-fold 28 133 IPR009072 GO:0046982
Seca3g01651 227 MobiDBLite consensus disorder prediction 1 25 - -
Seca3g01651 227 FunFam Nuclear transcription factor Y subunit gamma 30 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01651 Seca-Chr3 28471973 28476376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01651 22 222 CCAAT-HAP5 Transcription Factor Family AT3G48590 83.254 8.24e-109 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca3g01651 Histone 2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01651 - - gmx:100818447 338.576