Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01639 ATGGAGGGTCAGAGTCAGAGAGATCGCAGAATAGATGCTCTTGGAGATCTACGAGTCCTTCCCGACGAAATCCTCTGTGCTATTTTGGAACGACTCACTCCCCGAGATGCTGCTCGCGTCGCTTGCGTTAGCAGTGTGATGTACATTCTATGCAATGAAGAGCCACTGTGGGCGAGTCTATGCCTAAAAGGAGCATCTGGTTTGCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATTATGAGAATCTGCCAGACAAGTACAAAGAGTGCCATCAGCGACCTTTATATTTTGATGGGTTCAACTCTTTATTTTTGTACAGGAGATTATACCGAAGTCAGACCACATTGGATGCATTTTGCGCAGATGACGGAAATGTGGAGAGAATCAAAGACATCTCATTGAAGGACTTCTATAACGAGTATGACGCAAAGAAGCCGGTTATGCTTACTGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGTTGTTGCTAAACTATGGAGATGTAGCATTTAAAATTTCTCAAAGGAGTGCCCGGAAGATCTCCATGAAGTTGAAGGATTATGTCTCATACATGAAAGTTCAGCATGATGAAGATCCCTTATATATTTTTGATGAAAAGTTTGGAGAAGTTGCACCTAGCTTATTGAAGGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGATATCTTAGATACAGATAAACGTCCATCCTATAGATGGCTCATAATTGGACCACAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTCTGGCCGTAAAAGGTGGGCATTATATCCTCCAGGAAAGGTGCCTTTGGGTGTGACAGTACATGTTAATGAAGAAGATGGTGACGTCAATGTTGAGACTCCATCATCACTACAGTGGTGGCTAGACTTTTATCCTCTTCTTGCTGATGAAGACAAGCCAATTGAATGTACACAACTACCTGGAGAGACAATTTACGTTCCAAGTGGATGGTGGCACTGCGTTCTAAATTTGGAAACAACTATTGCAGTCACACAGAATTATGTTAATTCCAATAACTTTGAATTTGTATGCTTGGATATGGCACCTGGTTATCATCATAAAGGAGTTTGCCGTGCTGGGTTGCTTGCTCTTGATGAAGAAAGTTATGAAAATGTCAGACAGAACATGTCATGTAATGAAAAAAACTCAGGTTGTTCCGATTTGTCAAGGAAAGAGAAAAGAGCAAAAACTCAGAAAGATGTAGATGATCTCTATCATGAAAGATCCATAAGTGGTGTATCTAAAAACTATAATTTATGGAAAGATGGTTTTTCCTATGATATAAATTTCTTATCCATGTTTTTGGATAAGGATAGAGACCATTACAGTGCCCTGTGGAGCTCAGGCAACAGCATTGGCCAACGAGAACTAAGAGAATGGTTATCCAAGCTTTGGCTTCAAAAACCAAAAATGAGAGAGCTAATATGGAAGGGAGCATGTATTGCACTAAATGCTGGCAAGTGGTTAGAATGCCTATCAAAAATTTGTGCCTTCCACAATTTGCCCCCTCCCACTGATGATGAAAGGCTCCCTGTTGGTACGGGTAGCAATCCTGTTTATCTAGTGGGAAACTGTGTCGTTAAAATTTTTGTTGAAGGAGGACTGGAAGCTTCACTATATTGTTTAGGCACAGAGCTAGAGTTTTACAGTCTGCTGCATGAAGCCAACTCCCCTCTCAGTAAACATATTCCTAAAGTTTTGGCCAGTGGGATTGTTTATCTTGAAGATGGATCTTATACCAATTCAAGTTGGGATGGAAAAGGAATCCCTGATGTCATTGCAAAGAGCAATCTTATCAGGAAGAAATGTGACCTTGATGGTTTCTCATTTGGGGTATGGGGCAAGAAACAGTTGGAGTATAGGAATGCTGGGATGCCAGTGGATGGATCAGTTAGTTTAGCTGGTCACTCGAGCATATGGCCATATGTGATAACAAAAAGATGTGAAGGGAATATGTTTGCAGAGTTAAGAGACAGATTATCATGGGAAGATACAACAAACTTGGCCTCCTTTTTGGGAGAGCAGCTGCGCCACCTTCATCTTTTGCCACATCCACCTTTAAATATTTCATTTTTCTCTGATATTGAACACGAATTAAGCTTGTCTGAGGTTAATGGTTGTATTGCAACTTTTAATGGTAAAGCAAATACCGCAGCAGAATGGAGAATCTTCACCAGAACCTTAACAAAGATGAGGAAGGATGTCTCAAGCCGTTTGACCAAGTGGGGAGATCCAATTCCTAGCAAACTGATAGAGAAAATTGATGAATATATCCCACCTGATTTAGCTGAGCTGCTAAATATAACTGAGAATTTCGCAAGCAGTGCTTGTAAACCTTGCTCCTGGATACACACTGACATTATGGATGATAACATTTACATGGAACCATCATCAGTTTGCTCTACCTCCAGTGGGACTGAAGTTACTGCCCTGGTGGGCAATGGTTTGTCGAGTGACTATGAAGAAGTGAAATCCTGGTGTCCTAGTCACATTCTTGATTTCAGTGATCTTTCTATTGGGGATCCTATTTTTGATTTGATACCAATTCATTTAGATGTGTTTAGAGGTGATTTGAATCTTCTTAAGCGAGTTTTAGAAAGTTACAAACTTCCTTTTGCGAGTAACTTATCAAAGGATGAGTCAACAGAGAGTGGTCAGAAGTTTAGCCGACTTTCATATGTTGCCATGTGCTATTGTATTTTGCATGATGACAATGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCAGCAAAGTCATGGGAAGAAGTTGAGCTGAAAGTGTGGGGGGAGTTGAACAATTACAAAGGCTTTCCTTGA 2913 0.4082 MEGQSQRDRRIDALGDLRVLPDEILCAILERLTPRDAARVACVSSVMYILCNEEPLWASLCLKGASGLLQYKGSWKKTALHYENLPDKYKECHQRPLYFDGFNSLFLYRRLYRSQTTLDAFCADDGNVERIKDISLKDFYNEYDAKKPVMLTGLADTWPARHKWTTDQLLLNYGDVAFKISQRSARKISMKLKDYVSYMKVQHDEDPLYIFDEKFGEVAPSLLKDYCVPHLFQEDFFDILDTDKRPSYRWLIIGPQRSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEEDGDVNVETPSSLQWWLDFYPLLADEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNYVNSNNFEFVCLDMAPGYHHKGVCRAGLLALDEESYENVRQNMSCNEKNSGCSDLSRKEKRAKTQKDVDDLYHERSISGVSKNYNLWKDGFSYDINFLSMFLDKDRDHYSALWSSGNSIGQRELREWLSKLWLQKPKMRELIWKGACIALNAGKWLECLSKICAFHNLPPPTDDERLPVGTGSNPVYLVGNCVVKIFVEGGLEASLYCLGTELEFYSLLHEANSPLSKHIPKVLASGIVYLEDGSYTNSSWDGKGIPDVIAKSNLIRKKCDLDGFSFGVWGKKQLEYRNAGMPVDGSVSLAGHSSIWPYVITKRCEGNMFAELRDRLSWEDTTNLASFLGEQLRHLHLLPHPPLNISFFSDIEHELSLSEVNGCIATFNGKANTAAEWRIFTRTLTKMRKDVSSRLTKWGDPIPSKLIEKIDEYIPPDLAELLNITENFASSACKPCSWIHTDIMDDNIYMEPSSVCSTSSGTEVTALVGNGLSSDYEEVKSWCPSHILDFSDLSIGDPIFDLIPIHLDVFRGDLNLLKRVLESYKLPFASNLSKDESTESGQKFSRLSYVAMCYCILHDDNVLGAIFSIWEELRSAKSWEEVELKVWGELNNYKGFP. 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01639 970 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 14 587 - -
Seca3g01639 970 Gene3D - 5 91 - -
Seca3g01639 970 FunFam F-box protein At1g78280 108 365 - -
Seca3g01639 970 Pfam F-box-like 19 63 IPR001810 GO:0005515
Seca3g01639 970 Gene3D Cupin 109 365 - -
Seca3g01639 970 SMART cupin_9 208 375 IPR003347 -
Seca3g01639 970 SUPERFAMILY F-box domain 5 66 IPR036047 GO:0005515
Seca3g01639 970 SMART fbox_2 20 60 IPR001810 GO:0005515
Seca3g01639 970 Pfam Cupin-like domain 145 367 IPR041667 -
Seca3g01639 970 SUPERFAMILY Clavaminate synthase-like 119 372 - -
Seca3g01639 970 SUPERFAMILY Protein kinase-like (PK-like) 669 900 IPR011009 -
Seca3g01639 970 ProSiteProfiles F-box domain profile. 14 60 IPR001810 GO:0005515
Seca3g01639 970 ProSiteProfiles JmjC domain profile. 217 380 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01639 Seca-Chr3 28291162 28306467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01639 1 966 Glycosyltransferase AT1G78280 61.389 0.0 1214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca3g01639 Cupin_8 1.4e-21 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01639 - - gmx:100792541 1775.37