Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01616 ATGGCGCTACTACGTCTTCAATGCTCAACTTCAACATCCACACAACACTCTTTCTCATCCCTTCAAATTCACAACAAACCCTATTCCCAATCCTCCACCATTCTCTCTTTTTATCAGCCACCCTCTTCCTTTCACCTTCTTCCTCTATCCCTCGCCCATTCCCCAACCCTTATCAGAACCAAAGAAGCCCCTAATTTCACTCTCAGATTCGCCACTACATCTTCTCAAGAACAAATCCAAGAAACCGAAACCGAAACCGAAGAATTTTCTCGAACCAGGTTGCTCGCTCAGAACGTTCCCTGGACAAGCACCCCTGAAGACATTCGTTCTTTGTTCGAGAGACATGGAAAAGTCCTCGAAGTTGAGCTTTCTATGTATAACAAAACCAGAAATAGGGGTTTAGCGTTTGTCGAAATGGGTTCCCCTGAAGAGGCTCTTGCGGCTCTCAATAGTCTCGAATCGTATGAGTACGAGGGTCGCATAATAAAACTTAATTATGCTCGGCCAAAAAAGAAGATAACTCCACCCCCCGAGGAACCAAAGCCAGTGGCATTTAACTTGTTTGTTGCAAACTTGCCCTATGATGCAAGGTCTAAAGATCTCAGGGAGTTTTTTGAATCAGGAAGTGGTAGAGTTGTTTCTACAGAGATTATATTTCAGGATAACCCAAGAAGGTCATCTGGTTATGGATTTGTGTCCTTCAAGTCTAAGAAAGAAGCTAATGCAGCCCTTTCTGAGTTCCAAGGAAAGATTTTTATGGGAAGACCACTCAGGGTGGCACCTAGTAGGCGATTTGTTAAACTAGTAGAGGAGAGTGCAACACCTGAAGATACATCTTCTGAGTTGAGTGTGAATGAGGCAGAAGCTGACAAGGCTGATTGA 882 0.4399 MALLRLQCSTSTSTQHSFSSLQIHNKPYSQSSTILSFYQPPSSFHLLPLSLAHSPTLIRTKEAPNFTLRFATTSSQEQIQETETETEEFSRTRLLAQNVPWTSTPEDIRSLFERHGKVLEVELSMYNKTRNRGLAFVEMGSPEEALAALNSLESYEYEGRIIKLNYARPKKKITPPPEEPKPVAFNLFVANLPYDARSKDLREFFESGSGRVVSTEIIFQDNPRRSSGYGFVSFKSKKEANAALSEFQGKIFMGRPLRVAPSRRFVKLVEESATPEDTSSELSVNEAEADKAD. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01616 293 PANTHER OS02G0815200 PROTEIN 13 261 - -
Seca3g01616 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 264 IPR000504 GO:0003723
Seca3g01616 293 SMART rrm1_1 186 260 IPR000504 GO:0003723
Seca3g01616 293 SMART rrm1_1 93 165 IPR000504 GO:0003723
Seca3g01616 293 MobiDBLite consensus disorder prediction 271 293 - -
Seca3g01616 293 Gene3D - 176 281 IPR012677 -
Seca3g01616 293 SUPERFAMILY RNA-binding domain, RBD 92 261 IPR035979 GO:0003676
Seca3g01616 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 169 IPR000504 GO:0003723
Seca3g01616 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 258 IPR000504 GO:0003723
Seca3g01616 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 162 IPR000504 GO:0003723
Seca3g01616 293 Gene3D - 68 175 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01616 Seca-Chr3 27930148 27932284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01616 79 264 Eukaryotic Initiation Factors Gene Family AT2G36660 26.531 2.29e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01616 - - gmx:100790439 324.709