Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01613 ATGGCACTAGAGGCTGTGGTTTTCCCACAAGATCCATTCACATATAATAGTAAGGATTACTTGTACTCATTAGTAGGTAATGGATCTTGGGGCCATGACTATGGACTACTCCAAGAAGTAGAAGAAGAGAAAGTCCTTCTTGGAATTATCAACAACAACAACATTGAAAACAAACTTCATGCAAATTGGGATTCTTCTTCCTCTTCTTTGTTGCAAAATGTCAAAGACCAATGGGATTCTCATTCCTCCCCTGAAGTTGATCAATCTCTCACACCAACTAATTTCCCTCCTCCAGTTGAAGAACCCATCACAGTCACCAACATGAGTCGCAGAAAACGACGTCGCACCAAGAACGCCAAAAACAAAGAGGAAATCGAGAATCAGAGAATGACACACATTGCAGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACCTTGCTGTTCTTAGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCTATTATTGGAGGTGCTATTAACTTTGTGAAGGAGTTAGAGCAGCTTTTACAGTCCATGGAGGGTCAAAAGAAAACAAATTTAAACCAACCCCACAAGAATGTTATAAATGGCTCATCACCCTTTGCTGAGTTTTTCACTTTTCCTCAGTACACAACAGGTGCAACTCAGAACAATATGGCTTGTCCAGCCACAACAACGATGGTACAAAATCAAGAACAGAAACAGTTGGCTGTTGCAGACATTGAAGTCACCATGGTAGATAGTCATGCCAATCTTAAGATACTCTCAAAGAAACGACCTGGTCATCTTATGAAGATTGTTGTTGGGCTTCAAAGTCTTAAGCTCACAATTCTCCACCTTAATGTTACCACTTTGGATGATATGGTCCTTTACTCAGTTAGTGTAAAGGTAGAGGAGGGGTGTCAGCTGAACACGGTGGATGAAATTGCGGCTGCTGTGAATGAGCTATTACGCACACTGCAAGAAGAAGTGGCTTTCAGCTGA 1002 0.4162 MALEAVVFPQDPFTYNSKDYLYSLVGNGSWGHDYGLLQEVEEEKVLLGIINNNNIENKLHANWDSSSSSLLQNVKDQWDSHSSPEVDQSLTPTNFPPPVEEPITVTNMSRRKRRRTKNAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKKTNLNQPHKNVINGSSPFAEFFTFPQYTTGATQNNMACPATTTMVQNQEQKQLAVADIEVTMVDSHANLKILSKKRPGHLMKIVVGLQSLKLTILHLNVTTLDDMVLYSVSVKVEEGCQLNTVDEIAAAVNELLRTLQEEVAFS. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01613 333 CDD bHLH_AtFAMA_like 130 192 - -
Seca3g01613 333 PANTHER MAX DIMERIZATION, MAD 77 329 - -
Seca3g01613 333 MobiDBLite consensus disorder prediction 74 101 - -
Seca3g01613 333 Pfam Helix-loop-helix DNA-binding domain 128 179 IPR011598 GO:0046983
Seca3g01613 333 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 178 IPR011598 GO:0046983
Seca3g01613 333 SMART finulus 133 184 IPR011598 GO:0046983
Seca3g01613 333 FunFam Basic helix-loop-helix transcription factor 118 193 - -
Seca3g01613 333 Coils Coil 175 195 - -
Seca3g01613 333 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 195 IPR036638 GO:0046983
Seca3g01613 333 MobiDBLite consensus disorder prediction 74 94 - -
Seca3g01613 333 Gene3D - 117 195 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01613 Seca-Chr3 27899228 27901933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01613 1 303 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G22490 49.062 1.32e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g01613 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01613 - - gmx:100789380 437.958