Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01612 ATGACCACTCTCACACTCAAACTACACTCCAATTTTCAACATGACCTTCTCCTTCTCCTTCTTCTTCTTCTTTTCATACAAGCTCCGCCGCCGGCAACCGCACAGATCCCAAACACGCTGTCACCTCCACCGCCAGACAGACTTGACACAGGGCTTAAGTTCGACAAATCCATGGCCATCGTCCTCGTGATCCTCATCGTTGTGTTCTTCGTCTTGGGCTTCATTTCCGTCTACACTCGTCAGTGTGCAGAGCGAGGGATGAGAGGGAGGCTCGACCTTGCAATCCCAATCGGAAGCCACCGGAGACAGCGCGGTCTTGACCCGGAAATCATCGAAACCTTCCCAACCTTCGTCTACTCAACCGTGAAGGGGCTGAAAATTGGGAGAGCCACGCTAGAATGCGCCGTGTGCCTCAACGAATTCCAAGATAACGAAACGCTGCGTTTGATCCCAAAGTGTAGCCACGTGTTCCATCCTGAATGCATCGACGCTTGGCTTACCAATCACTCCACTTGTCCAGTTTGCCGAGCCAACCTCGTTCCACGACCTGGAGATTCTTCATTTATCGCTATTCAAATTCCGGATCCCGACGGTTACAGATCTAGATCCGATTCGGATGGCCCGACCCGGATTGACACACGTGGCAGCCCCAGTCCCAGTCCGCACAGTAACATCAGATCACCAGAGATGGCAAATGTTTCTCTTTCTCCCAAGGTGAATATTTCAGTTTCAGTTACTCCTAACCGTCCACCACGGTCAAGGTCAACGGGGTTTAGATTCGCGAATTGGTTTCCAAGGTCTCATTCGACAGGTCACTCGCTGGTTCAAGCGGGTGAGAGTCACGAGAGGTTTACCCTGAGATTACCGGAGGAAGTGCGGAACCGGTTGGTGAACTCAATGCTAAGCCACACGACGAGTTCTGGTGTGGCATTTACGCGAGAGAGCAGTGGGAGAAGGAGTTACAGGACGAGGAGCGTGGGTAGCAGTGCTGCTGGGAGGAGCTATGAACGGTTTGACCGGCCGGACCGGTGGGGTGTTTCTTGGACACCACCGTTTGTGGGTCGGGCCGGTTCGACCAAGTCGCCGAAGGGTTGGAGGGAGTCCAATAAGGCAATGGATGACGTGGGAGAACGATCTTCGGATCGCCTATTTGCAGGCAGGGAGGATAAATTAGAAGGGTGA 1182 0.5313 MTTLTLKLHSNFQHDLLLLLLLLLFIQAPPPATAQIPNTLSPPPPDRLDTGLKFDKSMAIVLVILIVVFFVLGFISVYTRQCAERGMRGRLDLAIPIGSHRRQRGLDPEIIETFPTFVYSTVKGLKIGRATLECAVCLNEFQDNETLRLIPKCSHVFHPECIDAWLTNHSTCPVCRANLVPRPGDSSFIAIQIPDPDGYRSRSDSDGPTRIDTRGSPSPSPHSNIRSPEMANVSLSPKVNISVSVTPNRPPRSRSTGFRFANWFPRSHSTGHSLVQAGESHERFTLRLPEEVRNRLVNSMLSHTTSSGVAFTRESSGRRSYRTRSVGSSAAGRSYERFDRPDRWGVSWTPPFVGRAGSTKSPKGWRESNKAMDDVGERSSDRLFAGREDKLEG. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01612 393 MobiDBLite consensus disorder prediction 308 330 - -
Seca3g01612 393 MobiDBLite consensus disorder prediction 210 231 - -
Seca3g01612 393 MobiDBLite consensus disorder prediction 308 332 - -
Seca3g01612 393 CDD RING-H2_EL5-like 133 176 - -
Seca3g01612 393 PANTHER RING FINGER DOMAIN-CONTAINING 41 179 - -
Seca3g01612 393 MobiDBLite consensus disorder prediction 349 393 - -
Seca3g01612 393 FunFam E3 ubiquitin-protein ligase ATL6 96 182 - -
Seca3g01612 393 MobiDBLite consensus disorder prediction 366 393 - -
Seca3g01612 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
Seca3g01612 393 ProSiteProfiles Zinc finger RING-type profile. 134 176 IPR001841 -
Seca3g01612 393 SUPERFAMILY RING/U-box 128 183 - -
Seca3g01612 393 Pfam Ring finger domain 133 176 IPR001841 -
Seca3g01612 393 SMART ring_2 134 175 IPR001841 -
Seca3g01612 393 MobiDBLite consensus disorder prediction 189 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01612 Seca-Chr3 27815590 27816771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01612 9 356 Rapid Response to Elicitors AT3G05200 37.151 5.42e-62 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01612 K10664 - gmx:100805815 377.867