Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01598 ATGAGGAAGAAAAGGAAAGGAAGTGAGACTGATGCATCTCCCGATCTGCATGATATTTTAGCCTCCAATCATGGCTCTGCTGTGTCGTCGAATCTGAAATCACATTACTCGCTAGAAGATTGTTCTAGGCTGAAGAAGAGGTGTAAAGAAGATGCTGACACTGAGCCAGCTGCTGCTTCTTATAAAAGTAGGCTTGCTGGCATTGCCACTGCCCCACCTTGTGGGACATCGTCTTTGATCACGCCAGGAAGAGGTCTCAAGAGGAAGATAGGTTGCATTGATGTTGCTACCCAGATGGGCAGAAAAAAGAAGATTGATGATGATTATGTTTCAGGTGAAACAATTGGGCAAGGGAAATTTGGATCAGTTTGGTTGTGTAGGTCCAGGGTTAGCGGAGCAGAATATGCTTGTAAGACTCTGAGGAAAGGGGAGGAGACGGTTCATCGAGAGGTTGAGATAATGCAACACTTGTCTGGACATTCTGGGGTTGTGACACTACAAGCAGTTTATGAAGAAGCTGACTGCTTTCATCTTGTGATGGAATTGTGCTCTGGAGGACGACTGATTGATCAAATGGTTAAGGATGGTCCATATTCAGAACAACGGGCTGCGAATATACTAAAGGAAGTGATGTTAGTCATCAAGTATTGTCATGACATGGGTGTTGTACACAGAGATATCAAACCTGAGAATATTCTGCTCACGGCATCAGGAAAATTAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCAGAAGGTCAGAACTTGACTGGTTTGGCTGGAAGCCCTGCATATGTTGCCCCTGAAGTGTTGTTGGGCAGATACTGTGAGAAGGTTGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGCAGTCTTCCTTTTCAAGGAGATTCATTGGAAGCTGTTTTTGAGGCTATCAAGACTGTCAAATTAGATTTCCAAGCAGGGATGTGGGAATCAATATCTAAACCTGCACGAGACCTCATTGGGAGAATGCTGACAAGGGATATTTCAGTGAGGATATCAGCTGAGGAAGTACTTAGTAAGTTTATGCTTTAA 1074 0.4423 MRKKRKGSETDASPDLHDILASNHGSAVSSNLKSHYSLEDCSRLKKRCKEDADTEPAAASYKSRLAGIATAPPCGTSSLITPGRGLKRKIGCIDVATQMGRKKKIDDDYVSGETIGQGKFGSVWLCRSRVSGAEYACKTLRKGEETVHREVEIMQHLSGHSGVVTLQAVYEEADCFHLVMELCSGGRLIDQMVKDGPYSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGKLKLADFGLAMRISEGQNLTGLAGSPAYVAPEVLLGRYCEKVDIWSAGVLLHALLVGSLPFQGDSLEAVFEAIKTVKLDFQAGMWESISKPARDLIGRMLTRDISVRISAEEVLSKFML. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01598 357 Pfam Protein kinase domain 109 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01598 357 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g01598 357 FunFam Maternal embryonic leucine zipper kinase 102 357 - -
Seca3g01598 357 PANTHER SERINE/THREONINE-PROTEIN KINASE 96 353 - -
Seca3g01598 357 SUPERFAMILY Protein kinase-like (PK-like) 100 353 IPR011009 -
Seca3g01598 357 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Seca3g01598 357 ProSiteProfiles Protein kinase domain profile. 109 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01598 357 SMART serkin_6 109 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01598 357 CDD STKc_CAMK 108 353 - -
Seca3g01598 357 Gene3D Transferase(Phosphotransferase) domain 1 100 357 - -
Seca3g01598 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01598 Seca-Chr3 27599014 27603077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01598 101 352 EF-hand Containing Proteins AT4G35310 43.511 1.39e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca3g01598 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01598 - - gmx:100812729 641.728