Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01583 ATGGGTGACACTCCAAAGCGTTCAAATCTTTCACGAAGAATAGCCTCCTTGGTCAGGTTCCGTGAAAAACGCAAAGAAAGATGTTTTGACAAGAAAATTAGGTACACTGTGAGAAAAGAGGTGGCACAGAGGATGCATCGGAAGAATGGGCAGTTTGCATCCTTGAAGGAAAGCCCAGGCTCATCTAGTTGGGATTCTGCACGGAGTTCTGGTCAAGATGGCACTCCTCATTCTGAATCTGTACGTAGATGTCAACATTGTGGTGTCAGTGAAAATAATACTCCTGCAATGCGTCGTGGGCCAGCTGGACCAAGGACATTATGTAATGCCTGTGGCCTTATGTGGGCTAACAAGGGTACACTCAGAGATCTCAGTAAGGGAGGAAGAAATCTTTCTGTTGAGCAAAGTGATCTGGACACTCCTGTTGATGTCAAGCCTACTGTTCTTGAAGGGGAATTGCCTGGCATCCAAGATCAGCGAGTAGAACTCTTACATGGTATTTCTGATGATCCTTCCAAGGCCAGTGCTACTGAAGGCTCTAATAGACATGCTGTAAACCCCAGTGATGAGGAATTGCATGAATCTGCAGAACACTTTACAAACACACTGCCACTGGAAATTGGTCATTCTTCAGCAAACGATGATGAGCAGGAACCTCTGGTTGAGCTTTCTAATCCTTCAGATACAGATATTGACATTCCTGGAAACTTTGATTAG 717 0.4491 MGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGSSSWDSARSSGQDGTPHSESVRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSDLDTPVDVKPTVLEGELPGIQDQRVELLHGISDDPSKASATEGSNRHAVNPSDEELHESAEHFTNTLPLEIGHSSANDDEQEPLVELSNPSDTDIDIPGNFD. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01583 238 ProSitePatterns GATA-type zinc finger domain. 84 111 IPR000679 GO:0006355|GO:0043565
Seca3g01583 238 MobiDBLite consensus disorder prediction 54 78 - -
Seca3g01583 238 PANTHER GATA TRANSCRIPTION FACTOR 28 2 231 IPR045280 GO:0006355
Seca3g01583 238 Pfam GATA zinc finger 84 120 IPR000679 GO:0006355|GO:0043565
Seca3g01583 238 SMART GATA_3 78 131 IPR000679 GO:0006355|GO:0043565
Seca3g01583 238 MobiDBLite consensus disorder prediction 42 83 - -
Seca3g01583 238 CDD ZnF_GATA 83 127 IPR000679 GO:0006355|GO:0043565
Seca3g01583 238 ProSiteProfiles CCT domain profile. 13 55 IPR010402 GO:0005515
Seca3g01583 238 Pfam CCT motif 13 54 IPR010402 GO:0005515
Seca3g01583 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 78 128 - -
Seca3g01583 238 ProSiteProfiles GATA-type zinc finger domain profile. 78 137 IPR000679 GO:0006355|GO:0043565
Seca3g01583 238 MobiDBLite consensus disorder prediction 169 238 - -
Seca3g01583 238 Gene3D - 76 136 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01583 Seca-Chr3 27353724 27358938 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01583 4 148 Tify Gene Family AT1G51600 53.503 1.64e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g01583 CCT 7.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01583 - - gmx:100801328 410.994