Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01582 ATGGAGCAGGCTTCGAAATTAGGGTTTCATCTCTTGTACACAGAGACACACGCGGGGAAATTGATGGAAGCCGTGAATTCACAACCTCTGCAGTTCGAGGACCCTGCGATACCGGTCGACGACGATGACGACGACGGTGGTGGCGTTGGTGATGCTATGGTTGAGTTGGAGGAGGAAAATGTCAATTCAGTGAGCGTTGCAGCGACTTCGAATCATGATGCAGTTGTTTTGCCTTCGCGTACTAGTGAGCTCACTCTTTCTTTTGAGGGTGAGGTTTACGTCTTTCCCGCTGTCACACCTCAGAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATGTGCAGGCAGGCGTGCCTACAGTTGAATTACCATTTGACCAAAAGAACAGGGTAATGCAGATCTTGACTTAA 414 0.4952 MEQASKLGFHLLYTETHAGKLMEAVNSQPLQFEDPAIPVDDDDDDGGGVGDAMVELEEENVNSVSVAATSNHDAVVLPSRTSELTLSFEGEVYVFPAVTPQKVQAVLLLLGGRDVQAGVPTVELPFDQKNRVMQILT. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01582 137 Pfam tify domain 79 111 IPR010399 -
Seca3g01582 137 SMART tify_2 77 112 IPR010399 -
Seca3g01582 137 PANTHER GATA TRANSCRIPTION FACTOR 28 40 132 IPR045280 GO:0006355
Seca3g01582 137 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01582 Seca-Chr3 27351176 27353650 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01582 21 132 Tify Gene Family AT1G51600 44.800 4.13e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca3g01582 tify 1.6e-10 No_clan