Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01581 ATGTACGGCCCTATGAACATGCCCAACCAGATCGAAGACAACGACGGCGACAGTCACATTCATTACGATTCGCATGCCCTCGAAGACGGTGGCGGCGGAGTCGAAGATGTTTCCACCGATACTGTGTATGTTTCCGGTGGTGGAGGCCCTGACATGTCTATTCAGCGCTGCGATGATTCTAGCCAGCTCACGCTTTCGTTTCGTGGCCAAGTTTATGTATTTGATTCTGTTACACCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGAGGATGTGAATTATCTTCAGGTTCGCAATGTTTGGAGATATCGCCTCAAAATCAGAGGGATGCAGCGGAATATCCTCCTAAATGTAGTCAACCACAGCGTGCTGCCTCGTTAATTAGGTTCCGTCAGAAGAGGAAAGAGCGGTGTTTTGATAAGAAAGTTAGATATGGTGTGCGTCAAGAAGTTGCACTCAGGATGCAACGTAATAAGGGTCAGTTTACATCATCTAAGAAACAAGACGGAGCCAATAGTTGGGGCGCAGATCAAGAGTCAGTGCAGGATGCTGTTCAATCAGAAACCTCATGCACACATTGTGGAATAAGTTCCAAATCCACCCCAATGATGCGAAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGCGGGCTTTTCTGGGCAAATAGGGTAAGTATTTCTCCATATGGTTTGCTTTGA 705 0.4723 MYGPMNMPNQIEDNDGDSHIHYDSHALEDGGGGVEDVSTDTVYVSGGGGPDMSIQRCDDSSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGCELSSGSQCLEISPQNQRDAAEYPPKCSQPQRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSSKKQDGANSWGADQESVQDAVQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRVSISPYGLL. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01581 234 SMART GATA_3 185 231 IPR000679 GO:0006355|GO:0043565
Seca3g01581 234 MobiDBLite consensus disorder prediction 158 179 - -
Seca3g01581 234 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 186 230 - -
Seca3g01581 234 CDD ZnF_GATA 190 225 IPR000679 GO:0006355|GO:0043565
Seca3g01581 234 Pfam tify domain 60 90 IPR010399 -
Seca3g01581 234 ProSiteProfiles Tify domain profile. 56 91 IPR010399 -
Seca3g01581 234 SMART tify_2 56 91 IPR010399 -
Seca3g01581 234 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Seca3g01581 234 Pfam CCT motif 123 165 IPR010402 GO:0005515
Seca3g01581 234 Gene3D - 185 231 IPR013088 GO:0006355|GO:0008270
Seca3g01581 234 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Seca3g01581 234 ProSiteProfiles GATA-type zinc finger domain profile. 185 221 IPR000679 GO:0006355|GO:0043565
Seca3g01581 234 ProSitePatterns GATA-type zinc finger domain. 191 218 IPR000679 GO:0006355|GO:0043565
Seca3g01581 234 PANTHER GATA TRANSCRIPTION FACTOR 28 6 225 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01581 Seca-Chr3 27331475 27337330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01581 60 228 Tify Gene Family AT4G24470 69.006 1.73e-79 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca3g01581 CCT 8.2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01581 - - lja:Lj0g3v0164269.1 386.726