LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g01578	ATGCCTCACAGAACCACTTACTTTTTCCCGCGTCAGTTTCCTGAGCGTGGAGGGTTAGATGAATCATCCAAAAAGCTATTGGATCACGAGAAGGAGAAAATCGTCAACTCAATCAAATCGGATACCTTTGGCGTTGAAAGCGACCTTCCTAAAAAGCCACTTTCGTCGTCAACTACCACTGCTCCAACCAAACACGACGTCGTTCTCTCCTCTGGTAAGCACTCCGCTGTTTCCGACCTTTTCGCCGCCGGTGACAAGTACCGAATCAAGCACAAGCAAATTGCCGCTTTCTGCGATTGGTTAATCGACAAAAAAGGAGATCACTCCGGTCACTACCTCCGACGCTTGTCCACAACCTCCGAGGAGGACCGCGACCTTCTTCTACCTCCGCCGGAGACCGTCGTCAAGGACACTGCCGTCGACCGAAGTTTTGACCGGCAGGTTTCGCTTCCGAGGTTTTCGAGCGGGAGCAGCTATGCTGGGAGCTTGTTTTCCGGAACGACATTGGATGGCAATTTTTCCAGCGACATTAAGGAGGAAACGCCGTCGTCTCGGGTTTCCACCATTACCACCACCACTCCAGCGAGGAGACAGAAGGAGGAAGAAGAAAACAAAGACACATTGGCGAAGAAGTCCGAAGAAAGCTACATCTTGCAGCTTACTCTGGCAAAGAGGCTCACTTATTTGGCTAGTCTCGTGACGGAGCCAGTTCTCGCTCCTGTCACTGAAACCTGGGATGCTGAATCTGTTTCTTATCGTTTATGGGTGAGTGGGTGCTTGTCGTACTCGGATAAGATATCTGATGGTTTTTATAACATATTGGGGGTGAATCCGTATCTGTGGGTGATGTGCAATGATGTGGAGGAAGGTAGGAGGATACCTACTTTGATGGCGCTTAAAGCTATTGAACCCAGCGAGACATCAATGGAGGTGGTTCTTGTTGATAGGCATGAGGACTCTCGCCTGAAGCTGCTTCATGATAAGGCACAAGAGTTGTATTGTGCTTCCGAGAACACCTTGGTGTTGGTGGAACAACTGGGAAAACTTGTTGCCATATATATGGGGGGCACGTACCCGGTGGAACAAGGAGATCTCCACAAGCGCTGGAAGTTGGTTAGTAAGAAGTTGAGGAATTTTCAAAAGTGTGTTGTGCTTCCCATTGGCAGCCTATCTACTGGGCTTTGTAGGCATCGGGCAATTCTCTTCAAGAGATTGGCAGATTACATAGGTTTGCCTTGTCGCATAGCTCGTGGTTGCAAGTATTGTGTTGCAGATCACAGATCCTCTTGCCTAGTCAAGATTAAAGATGACAAGCAGCTCTCAAGGGAATACGTAGTCGACCTAGTTGGGGAACCAGGAAATATCCATGGGCCAGATTCCTCAATCAATGGAGCATATGTTTCTTCGATGCCTTCCCCATTTCAAATTTCTTATTTAAAAGAATTACAATCACCTTATATGGATGGTGCAGCATGTTCTCAATCTATAAGTTTCGATCGTAATTCTGTTAATCCTGAAAGTCATCCATATTCAGGCTGTGGACAGAATGATCTACAAGTTAAAGAAACTGATTTGCTAAAACATCATAAGGGCTCCATTTATGCTTCAGTTGATCAAACCTGTGAAGGAACAGAGCCACCTCTAATTCCTTTTGGTTTAAAAGGGAATGAAGACGAATGCCCGGTTTTAAGTTCAATTTTGCCTACCATTCATGAAGATGTTTCTAAAGCTCTTCATCCTGCCAGTGAAGCATCATTGCATGAATATCCAATAGTTAGTGACGATGCAGTTGTAGTGCAAGAAACTTCCAACAATGAGATCATTGTAACTGGAAGTTCTGTGGTAAAGAGTACTTTCAAGCAATGTATACTTAGTTCATCCATCCAGTCAGAATTGAAACAGCTAGACAACAAAATTGAAAATCAGGGCTGTTTACCAGCTGGGAGTGTTCCAAGATATGTGAATCTTGAACCATCACTTGCAATGGACTGGCTTGAAATATCATGGGATGATTTACGAATTAAAGAGCGTGTCGGTGCTGGCTCATTTGGGACAGTGCACCGTGCTGAATGGCATGGATCAGATGTTGCAGTCAAGGTTTTAACGGTTCAGGATTTCCATGATGATCAATTGAAGGAGTTTCTGAGAGAGGTTGCAATAATGAAACGTGTTCGCCATCCAAATGTGGTGCTCTTCATGGGTGCAGTTACAAAACGACCCCATCTATCAATAGTGACAGAGTATTTACCTAGGGGTAGTTTATACCGACTGATACATAGGCCAGCATCTGGTGAAATTATGGATAATAGGAGAAGATTACGGATGGCTCTGGATGTGGCTAAAGGGATCAATTATCTCCATTGTCTGAAACCTCCAATTGTGCACTGGGATCTCAAGTCCCCAAACTTGTTAGTGGACAAAAATTGGACTGTGAAGGTTTGTGACTTTGGGTTGTCCAGATTTAAGGCAAACACTTTCATACCATCAAAATCTGTTGCTGGAACACCTGAGTGGATGGCTCCAGAATTTCTTCGTGGAGAACCTTCAAATGAGAAATCTGACGTATACAGTTTTGGAGTTATCTTATGGGAACTTGTGACCATGCAGCAACCATGGAGTGGACTTAGCCCTGCCCAGTAG	2640	0.4504	MPHRTTYFFPRQFPERGGLDESSKKLLDHEKEKIVNSIKSDTFGVESDLPKKPLSSSTTTAPTKHDVVLSSGKHSAVSDLFAAGDKYRIKHKQIAAFCDWLIDKKGDHSGHYLRRLSTTSEEDRDLLLPPPETVVKDTAVDRSFDRQVSLPRFSSGSSYAGSLFSGTTLDGNFSSDIKEETPSSRVSTITTTTPARRQKEEEENKDTLAKKSEESYILQLTLAKRLTYLASLVTEPVLAPVTETWDAESVSYRLWVSGCLSYSDKISDGFYNILGVNPYLWVMCNDVEEGRRIPTLMALKAIEPSETSMEVVLVDRHEDSRLKLLHDKAQELYCASENTLVLVEQLGKLVAIYMGGTYPVEQGDLHKRWKLVSKKLRNFQKCVVLPIGSLSTGLCRHRAILFKRLADYIGLPCRIARGCKYCVADHRSSCLVKIKDDKQLSREYVVDLVGEPGNIHGPDSSINGAYVSSMPSPFQISYLKELQSPYMDGAACSQSISFDRNSVNPESHPYSGCGQNDLQVKETDLLKHHKGSIYASVDQTCEGTEPPLIPFGLKGNEDECPVLSSILPTIHEDVSKALHPASEASLHEYPIVSDDAVVVQETSNNEIIVTGSSVVKSTFKQCILSSSIQSELKQLDNKIENQGCLPAGSVPRYVNLEPSLAMDWLEISWDDLRIKERVGAGSFGTVHRAEWHGSDVAVKVLTVQDFHDDQLKEFLREVAIMKRVRHPNVVLFMGAVTKRPHLSIVTEYLPRGSLYRLIHRPASGEIMDNRRRLRMALDVAKGINYLHCLKPPIVHWDLKSPNLLVDKNWTVKVCDFGLSRFKANTFIPSKSVAGTPEWMAPEFLRGEPSNEKSDVYSFGVILWELVTMQQPWSGLSPAQ.	880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g01578	879	Pfam	Protein tyrosine and serine/threonine kinase	672	877	IPR001245	GO:0004672\|GO:0006468
	Seca3g01578	879	Gene3D	Phosphorylase Kinase; domain 1	665	749	-	-
	Seca3g01578	879	CDD	STKc_MAP3K-like	678	879	-	-
	Seca3g01578	879	ProSitePatterns	Protein kinases ATP-binding region signature.	678	699	IPR017441	GO:0005524
	Seca3g01578	879	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	793	805	IPR008271	GO:0004672\|GO:0006468
	Seca3g01578	879	SUPERFAMILY	Protein kinase-like (PK-like)	652	878	IPR011009	-
	Seca3g01578	879	MobiDBLite	consensus disorder prediction	174	194	-	-
	Seca3g01578	879	Pfam	Ethylene-responsive protein kinase Le-CTR1	247	455	-	-
	Seca3g01578	879	Gene3D	Transferase(Phosphotransferase) domain 1	751	879	-	-
	Seca3g01578	879	ProSiteProfiles	Protein kinase domain profile.	672	879	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g01578	879	SMART	serkin_6	672	873	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca3g01578	879	MobiDBLite	consensus disorder prediction	174	207	-	-
	Seca3g01578	879	FunFam	Serine/threonine-protein kinase isoform 1	662	750	-	-
	Seca3g01578	879	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	211	876	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g01578	Seca-Chr3	27201727	27210060	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g01578	1	879	MAP Kinase Kinase Kinase	AT4G24480	56.182	0.0	979

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL_CTR1-DRK-2	Seca3g01578		EDR1	1.2e-76	CL0125