Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01570 ATGCCAATGCCAGAAAAAAAGTGCAAGAAGGTCTCATTCTCTGAGGAAGACGCGGCTACTCTCACACAGAGATATGATGCAACCACTATATTAACGGTGCTTCAAGAGATAGCGCATTATCCTCATTCCAAGATTGATTGGAATGAGTTGGTCAAGAAAACCTCCACGGGAATTTCTAATGCCAGGGAATATCAGATGCTCTGGCGTCACTTGGCCTACCGTGATGCCTTGCCTGAAAACTTAGAAGATAGGGCTGAACCTATGGACGATGATAGTGACTTAGACTGTGAGCTGGAAGCATTACCCCCAGTAAGTGCAGAATCTGCCTCGGAGGCTGCAGCATGTGTGAAGGTAATGATTGCTTCCCGTACGCTAAGTGAATCTACCCCTAGTAGCTCAACAATTGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTAGAACTCCTAATGAAAGTTCACAGCCCTCTAATTTGATGCAAGGGACAAGCATTATTTTTCCAGTCACTGTTCAGAGACAGACACTGCCAACTGTATCATCAACAGATGGTATAGAAACCAAGGGATTAGTTGGTGGTAACATGGCTTCCAAAAGGAGGAGAAAAGCATGGTCAGAGGAAGAGGACATGCAGCTTCGAGCTGCTGTTCAGAGATGGGGTGAAGGGAATTGGGCAACCATGGCAAAAGGAGACAACTTTCCTATTAAGAGAAGTCCAACACAGTTGGCTCAGAGGTGGAGCATTTTGCGAAAGAAAGATGGCAGTGCCAATTCAGGAACCATCTTGACCAGCACACAGTATACTACTGCTGAACAGCTGGCAACTCGTCACTCTTTATCTTTAGCCCTTGATATGCCATTCAAAAAGTTAACTGCTCCTGGGATGACTGATCCTGTCAGGACATCCATATCAATTAGAAATCAAGTGCGGCCTTGTAATAGTACAGATGTGTCCAAAGTTCACCGTAGTTGTGTACCTCCTCAACATCCATCTCAACAAGCTTTGTTGGGATCTTGTGCTTCCTCTGCAAAATCCAAATTAGCCTCCGAAAAAACAGTCTCAAAGTGTAACCTAATTCCAGATCCTGAGTTAAAATCTACCACAAGGTCACAAATTGTTTCACAATCAAATACCATATCACAATTTAAGGTTGCTCAATTAAGAAACACAGTAGGCACTATCCCTGCAGGTGCATTGACAACAACATCTGTTTCTGCTGGTTTGGCTTCTAACCTAAAGGATAAACGTGTTAGCTCTGTGGTTGATGAAGTTATGTTGAAGCAAGAAGTTAATCCCTCACAAGAATCTAGAGATTCTGACTCTGGCTCCCTACCAAAAGAGAAGGTACAAGAAAGTGAAGCCCCTAAATTTACTACTCAGGGCCAAGTTGATAGCAAACCGGATAAGGGGACACTAGATTCAGATAAAGAAAAGAGCATACCTCTTACAAAAAATTCAAGTGAGAAAATTTCAGAACGTAAAACTGTCTCACAAAATCCAGGAGGGAGTGAAGAGAAAGAAAGTGGTAAGAATTCAAATTTTACTCTCAAGATGGAGACCACTAAGAATGAGAGTAGCAACCTCAATAAGGAGAGTCAAGATTTAGACCAAGAGAAGAGGACAAATTCAATTAATGGAAGTCTTACAATCAAAACATGA 1665 0.4234 MPMPEKKCKKVSFSEEDAATLTQRYDATTILTVLQEIAHYPHSKIDWNELVKKTSTGISNAREYQMLWRHLAYRDALPENLEDRAEPMDDDSDLDCELEALPPVSAESASEAAACVKVMIASRTLSESTPSSSTIEAPLTINVPVCHSSRTPNESSQPSNLMQGTSIIFPVTVQRQTLPTVSSTDGIETKGLVGGNMASKRRRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDNFPIKRSPTQLAQRWSILRKKDGSANSGTILTSTQYTTAEQLATRHSLSLALDMPFKKLTAPGMTDPVRTSISIRNQVRPCNSTDVSKVHRSCVPPQHPSQQALLGSCASSAKSKLASEKTVSKCNLIPDPELKSTTRSQIVSQSNTISQFKVAQLRNTVGTIPAGALTTTSVSAGLASNLKDKRVSSVVDEVMLKQEVNPSQESRDSDSGSLPKEKVQESEAPKFTTQGQVDSKPDKGTLDSDKEKSIPLTKNSSEKISERKTVSQNPGGSEEKESGKNSNFTLKMETTKNESSNLNKESQDLDQEKRTNSINGSLTIKT. 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01570 554 SUPERFAMILY Homeodomain-like 201 254 IPR009057 -
Seca3g01570 554 ProSiteProfiles Myb-like domain profile. 198 252 IPR001005 -
Seca3g01570 554 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 4 545 - -
Seca3g01570 554 MobiDBLite consensus disorder prediction 494 530 - -
Seca3g01570 554 MobiDBLite consensus disorder prediction 470 493 - -
Seca3g01570 554 Pfam Myb-like DNA-binding domain 203 248 IPR001005 -
Seca3g01570 554 CDD SANT_TRF 204 253 - -
Seca3g01570 554 Coils Coil 520 540 - -
Seca3g01570 554 Gene3D - 196 258 - -
Seca3g01570 554 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 256 IPR017930 -
Seca3g01570 554 SMART sant 202 254 IPR001005 -
Seca3g01570 554 MobiDBLite consensus disorder prediction 428 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01570 Seca-Chr3 27044021 27050575 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g01570 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01570 - - gmx:100805773 641.343