Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01560 ATGGTCTACCCAGGTTCAATGCAATTGTCTCGTGACGTTAGGCTCAACAGTAATAACAGATTCCGTAGCCTCCACCATAATCCGATGGGGGTTAGTCGGTTACATTTGGTCACCATAAATCTTTTACCACGCAGTTTGAATCAAGATTCTTTGGCACTCCATCTTTTGAGTAGAGTACATGCCCCAGTAAGGCATGTGCCTTCGAGATGTAATGTTTTTGTGTGTCGGTCTGTCATGATACCAGGTGGTGGGAGTGGGACTCCACTCATGAAATCTGCTAGTGTTTTTTTAACAAGGTCATGTGATGCTTTACTGGGAAGCCCTGTTTTGCTTCGATTGATCCCAGCCCTTGGTATTATTGCCTTTGCTGTTTGTGGTCTTGAGCCACTCCTTCGTCTCAGCAGGATCCTATTTCTTCAAGTAAGGACTGATAGTAGCTGGAAGAAAAGTAGTTCACGATATATTATGACATCTTATTTTCAACCATTACTGTTGTGGACTGGGGCAATGCTCATATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGACTAGCCAGGCTGTGAAGCAACGGCTGCTGAATTTTGTGAGATCCTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCACAAAAATTCTTTCTGGAGGCAAATGACTCCAGTGATACAAGAAATATGGGTCTGGATTTTGCTGGGAAAGCAATATATACTGCTGTATGGGTTGCTGCTGTGTCATTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGTTAACGGCTGGTGGTTTAGGAACAGTATTGCTCACTCTTGCAGGTCGTGAGATATTTACGAACTTCCTTTCAAGTATAATGATCCATGCAACTCGGCCATTCATTGTGAATGAGTGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGTACAGTTGAGCATGTAGGCTGGTGGTCACCAACCATTGTGAGAGGTGATGATCGTGAGGCAGTTCATATCCCTAATCACAAGTTCACTGTAAATGTTGTGAGAAATCTGACTCAGAAGTCTCATTGGCGTATCAAGAGTTACATTGCTATTAGTCACTTGGATGTTAACAAAATTAATAGTATTGTAGCTGATATGCGCAAGGTTTTGGCTAAGAATCCTCAAGTAGAGCAGCAAAAATTGCATAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTCAAAACTTCACATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTTGTCAGCCATCATCGAGCTCGCTTAGCCACTCCCATCCGTACAGTTCAGAAAATATATGGTGAGGCTGACTCAGAAAATATACCCTTTGGGGACACCATTTTCACTCGATCCAGAGCAGCAGTAAATCGCCCATTCCTACTGATAGAACCACCATATAAAGTTAATGGTGAAGATAAAGTTAAGCCTTCCACCCGTTCATCTCGTGCAAATGAGGAAAAAGATGCCAAGGTTGATGAAACTGTGGCATCTGAACCCAAAGGAGACGAGAATTTTGCAGCGACATCAAGCTCCCCACCAGGTGTAAGCTCCAAGGATAAATCCAAGTCAAGTTCTGAGGCACAAATCCAGAGTATTGGTTCTGATAGTTCAGTTGAGAAGACCTCCAAAACCATGCAGCCTAAAAAGGAAAGTGCAGTAGAGGTAGGAAAGGGAAGTACAGTTCCTGCATCTAAAAACCTTGCACAAAGTGCTGTGCCTGAAGTTCCTCCTGTTACTTCCCATGAGTCTGGCAAGGGAGAAACTGCTTCTGCTACTACTTCACAGTCAAAGCAAGATGAAGAGAAACCTGCTGTCTCTTCATCAACTGTCAGGTCTTCCTTGGAAGAGAACATTCTTCTTGGGGTTGCATTGGAAGGCTCAAAACGAACTCTTCCAATTGAGGAAGAAATGACACCGCCATCTCCTATCCCTGCAGAGTCACAAGGATTTGCTGTCCAACGGAATGGGAGTGGACCTCCTGCTAACAAGGATAAGCAGAATGACTAG 2091 0.4319 MVYPGSMQLSRDVRLNSNNRFRSLHHNPMGVSRLHLVTINLLPRSLNQDSLALHLLSRVHAPVRHVPSRCNVFVCRSVMIPGGGSGTPLMKSASVFLTRSCDALLGSPVLLRLIPALGIIAFAVCGLEPLLRLSRILFLQVRTDSSWKKSSSRYIMTSYFQPLLLWTGAMLICRALDPLVLPSETSQAVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEANDSSDTRNMGLDFAGKAIYTAVWVAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIVRGDDREAVHIPNHKFTVNVVRNLTQKSHWRIKSYIAISHLDVNKINSIVADMRKVLAKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYGEADSENIPFGDTIFTRSRAAVNRPFLLIEPPYKVNGEDKVKPSTRSSRANEEKDAKVDETVASEPKGDENFAATSSSPPGVSSKDKSKSSSEAQIQSIGSDSSVEKTSKTMQPKKESAVEVGKGSTVPASKNLAQSAVPEVPPVTSHESGKGETASATTSQSKQDEEKPAVSSSTVRSSLEENILLGVALEGSKRTLPIEEEMTPPSPIPAESQGFAVQRNGSGPPANKDKQND. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01560 696 Gene3D - 298 351 IPR023408 -
Seca3g01560 696 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Seca3g01560 696 MobiDBLite consensus disorder prediction 531 569 - -
Seca3g01560 696 Pfam Mechanosensitive ion channel 240 447 IPR006685 GO:0016020|GO:0055085
Seca3g01560 696 Gene3D - 194 297 - -
Seca3g01560 696 MobiDBLite consensus disorder prediction 498 696 - -
Seca3g01560 696 MobiDBLite consensus disorder prediction 611 643 - -
Seca3g01560 696 MobiDBLite consensus disorder prediction 676 696 - -
Seca3g01560 696 MobiDBLite consensus disorder prediction 498 527 - -
Seca3g01560 696 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 2 687 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01560 Seca-Chr3 26864765 26872908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01560 1 664 Mechanosensitive Ion Channel Family AT1G58200 55.228 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01560 K22047 - gmx:100796022 1105.51