Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01558 ATGATGTTGTGCTCATTGCATAACCTTGGACTTCAGTTCAATTCAACAATGGCCTATTCGGGTTCAATACGATTGTCTCACGGAATCAGGCTATACACTAATAATGGAAGCTGTAGTTTTTGTCATAAGCCTATGCGTGGTGATTTTGTTATCATCAACCTTTCACCACATGGTTTGAGGCAGGGTTCTTCAACACTCCTTCTTTCCAGATTACATGGCCCACTTAAGCCTGTACCTTCTAGATGTAATGTTTTGTTTTGCCGGTCTGCCCTAACACCAGCTGGAGGGTGTGAGGCCCCACTTGTGAAAGTGGCTACTGTTTCTTTGTCAAGGTCATATAATGCTATATCAGTAAGACCAATTGTGCTTCGATTGATCCCTGCACTTGGTATCATTGGCTTTGCTGTCTTTGGTCTTGAGCCACTTCTGCGCTTGAGTAGGGTTGTATTTCTCCAAGAAAGGACTGATAGAAGTTGGAAGAAAAGTAATTCACGTTATATTATGACATCTTATTTTCAACCTTTGCTGCTCTGGACTGGGGTAATGCTCATATGCAGGGATTTAGATCCACTAGTCCTACAATCAGAAACCAGTCAGAATATGAAGCAACGGCTGCTGAGTTTTGTAAGAGCTTTGTCAACCGTGCTTACATTTGCTTACTGTTCTTCAAGCTTAACTCGACAAGCACAAAAATTCTGTATGGAGACAAATGACTCCAGTGATGAAAGAAATATGAGCATTAATCTTATTGGAAAAGCTGTGTACACTGCAATATGGGTTGCTGCTGTATCGTTATTCATGGAGTTGATGGGTTTCTCCACCCAGAAGTTGTTGACTGCTGGTGGTTTGGGCACAGTGTTGCTTTCCCTTGCAGGTCGTGAGATATTTACAAACTTCCTTTCAAGTGTAATGATTCATGCAACACGTCCATTTGTTGTGAATGAGCGGATTCAAACAAAGATCAAAGGATATGAGGTTTCTGGTAAAGTTGAGCATGTAGGCTGGTGGTCACCAACAATAGTTAGAGGTGCTGATTGTGAAGCAGTTCATATTCCTAATCACAAGTTGAGTGTAAATGTTGTGAAGAATCTTAGTAAGAAATCTCATTGGCGCATCAAGACTCACCTTGCTATTAGTCACTTGGATATTAGCAAGGTTAATAGTATTATAGCTGATATGCGCAAGGTTTTGGCCAAAAATCCTCAAGTAGAGCAGAAAAAATTGCACAGAAGGGTTTTTCTGGAGGATATTAATCCACAAAATCAGGCTCTTATGATATTAGTGTCTTGCTTTGTTAAAACTTCACATTCGGAAGAGTACCTCCGTGTTAAGGAGGCAATTCTCTTGGATCTTCTTAGAGTCATCAGTCATCATGGAGCTCGGCTTGCCATGCCTATCCGCACAGTTCAGAAGATGTGCAGTGATGCTGATTTAGAAAACGATCCATTTGATGACACCATTTCCACACGTTCCAGAGCAAAGACAAACCGTCCATTCCCGCGTGTAGATCCACCTTATAAAGTGTAG 1527 0.4139 MMLCSLHNLGLQFNSTMAYSGSIRLSHGIRLYTNNGSCSFCHKPMRGDFVIINLSPHGLRQGSSTLLLSRLHGPLKPVPSRCNVLFCRSALTPAGGCEAPLVKVATVSLSRSYNAISVRPIVLRLIPALGIIGFAVFGLEPLLRLSRVVFLQERTDRSWKKSNSRYIMTSYFQPLLLWTGVMLICRDLDPLVLQSETSQNMKQRLLSFVRALSTVLTFAYCSSSLTRQAQKFCMETNDSSDERNMSINLIGKAVYTAIWVAAVSLFMELMGFSTQKLLTAGGLGTVLLSLAGREIFTNFLSSVMIHATRPFVVNERIQTKIKGYEVSGKVEHVGWWSPTIVRGADCEAVHIPNHKLSVNVVKNLSKKSHWRIKTHLAISHLDISKVNSIIADMRKVLAKNPQVEQKKLHRRVFLEDINPQNQALMILVSCFVKTSHSEEYLRVKEAILLDLLRVISHHGARLAMPIRTVQKMCSDADLENDPFDDTISTRSRAKTNRPFPRVDPPYKV. 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01558 508 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 17 508 IPR045042 -
Seca3g01558 508 Pfam Mechanosensitive ion channel 252 461 IPR006685 GO:0016020|GO:0055085
Seca3g01558 508 Gene3D - 204 309 - -
Seca3g01558 508 Gene3D - 310 363 IPR023408 -
Seca3g01558 508 SUPERFAMILY Sm-like ribonucleoproteins 295 365 IPR010920 -
Seca3g01558 508 MobiDBLite consensus disorder prediction 484 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01558 Seca-Chr3 26844290 26853399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01558 25 508 Mechanosensitive Ion Channel Family AT1G58200 59.836 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01558 K22047 - gmx:100797302 821.617