Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01555 ATGAAGAGGACGAAGATCAAGATTAAGAAAATCGACAACTTAACGGCGAGGCAGGTAACGTTTTCTAAGAGGAGGCGAGGGCTCTTCAAGAAAGCTCAAGAACTTTCGGTGCTATGCGATGCTGAGGTTGGCCTCATTGTTTTCTCAGCTACCGGGAAGGTCTTTGATTATGGCAGCTCCAGTCTCAACAAGTTGAATTTCTATTCATTATGA 213 0.4413 MKRTKIKIKKIDNLTARQVTFSKRRRGLFKKAQELSVLCDAEVGLIVFSATGKVFDYGSSSLNKLNFYSL. 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01555 70 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 Gene3D - 13 68 IPR036879 GO:0003677|GO:0046983
Seca3g01555 70 SUPERFAMILY SRF-like 3 64 IPR036879 GO:0003677|GO:0046983
Seca3g01555 70 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Seca3g01555 70 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca3g01555 70 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01555 Seca-Chr3 26791452 26795909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01555 1 70 MADS-box Gene Family AT4G24540 71.831 4.86e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca3g01555 SRF-TF 4.4e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01555 - - gmx:100776749 113.235