Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01552 ATGTTTTCTCTCACCTTTCTCCTCCTTCTCTATATCAAACACTGCAACGGTGGGAATATCCACACTGGAGTGAACATTACTAGCGGTATCTCAGCTTCACGAGCGATTCCACCTTTAAGCGGAAGGAAGAACTCCGGCATAGACCGTACCATAGTGGAATCGTTACCCATCTTCAGATTCGGATCACTGAGGGGTAAAAAAGACGGGCTTGATTGCGCGGTTTGTCTCAACAAGTTCGAGGCTGCAGAGGTTCTTCGACTGTTACCGAAATGCAAGCACGCGTTTCACGTCGAATGTGTGGATACATGGCTGGATGCACATTCCACTTGCCCTCTCTGTCGTTACAGAGTGGATCCAGAGGACATTCTGCTAGTGGACGATGCAAAGGTTTCACGCCAGAACAAGGAAGAGGAATGTTTGGACATTGAAAGAGGAGGGAGAAGCGAGATTGTAGAGTCTCGGCGGAGACATTCGTCGGTGGAGGAAAGGGAATCGGAACGGGAAAGGGAAAGGAGGAAAACGGCGTCGTTTAGGAGGTCATTGGATAGTGCGACATCGAGAAAGAAGAACGAGAGCGTGAGCGTTGGTATTGACATAGGGTGTTTTGTCCGTCCCAGAAAAGACGGGATGTTGTTGACACAAGACACGGAGAACAGAGACAGAGACAGAGAAAGAGAAAGAGACAGGACAAGCGTGGAAAGGAGGTTGGAACACCGGATCATTGTCTCCCCATCACCACACACACACAATGGGCTCCACTTACATCACCAGCGGTGGAGCGATGTGCAACCTTCAGACCTCCTGTATCTAACGTCGGAGATGATAATCAGTGAGTCGCGCCGAGTGAACAACCACCGTAGTACGAATGATAATGACGTGGTTCAGGACAGTTGGAATGGCAGGGGAATAATAAATTCGAGAAGCGTGTCTGAGATCACGGGATTGAGCAGGTTCTCCAGCAATAATAATAACAACAACGGCACAGTCACGGAGAGAGAGGAAGGATTAGTCTCCAGGTGGTTGGCTTGGATTTCTCAGTCTCATTCACAACCAGCTGTACGGTAG 1065 0.492 MFSLTFLLLLYIKHCNGGNIHTGVNITSGISASRAIPPLSGRKNSGIDRTIVESLPIFRFGSLRGKKDGLDCAVCLNKFEAAEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLVDDAKVSRQNKEEECLDIERGGRSEIVESRRRHSSVEERESERERERRKTASFRRSLDSATSRKKNESVSVGIDIGCFVRPRKDGMLLTQDTENRDRDRERERDRTSVERRLEHRIIVSPSPHTHNGLHLHHQRWSDVQPSDLLYLTSEMIISESRRVNNHRSTNDNDVVQDSWNGRGIINSRSVSEITGLSRFSSNNNNNNGTVTEREEGLVSRWLAWISQSHSQPAVR. 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01552 354 MobiDBLite consensus disorder prediction 151 189 - -
Seca3g01552 354 Pfam Ring finger domain 71 114 IPR001841 -
Seca3g01552 354 FunFam RING-H2 finger protein ATL43 47 121 - -
Seca3g01552 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 1 347 - -
Seca3g01552 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 121 IPR013083 -
Seca3g01552 354 MobiDBLite consensus disorder prediction 151 186 - -
Seca3g01552 354 SUPERFAMILY RING/U-box 54 119 - -
Seca3g01552 354 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
Seca3g01552 354 Coils Coil 353 354 - -
Seca3g01552 354 CDD RING-H2_EL5-like 71 114 - -
Seca3g01552 354 SMART ring_2 72 113 IPR001841 -
Seca3g01552 354 MobiDBLite consensus disorder prediction 210 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01552 Seca-Chr3 26770473 26771537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01552 11 343 C3H Transcription Factor Family AT5G05810 44.722 4.40e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01552 K19041 - cave:132189697 341.273