Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01549 ATGAAAGGAGAATATGTAGAGCAACATCCCAAGAGTGAAACTTCTGATATGTTCTCAAAGCTTCACCACCAAAACCAATCACAACCTCTACACCACCCATTCCCTCACCACCCTTTCCAACTCGCCTCTGCGGACGGCGGAGCCGCCACCCCTAACACCGCTCAGAAGCCCAACTCTTCGGGCGACGGTGCAACCATTGAGGTAGTGAGGCGGCCCAGAGGGCGCCCACCTGGATCCAAAAACAAGCCCAAACCACCAGTCATCATAACCCGTGACCCAGAGCCCGCCATGAGCCCGTACATTCTCGAAGTATCAGGGGGAAACGACGTCGTCCAAGCTATAGCACTTTTCACTCGCCGCAAGAACATGGGCCTAAGCATCCTAACGGGTTCTGGAAGCGTCGCTAACGTCACTCTTCGTCAACCTTCAACCACTCCCGGAGCTACCGTTACTTTTCACGGCCGTTTCGATATCCTCTCCTTATCCGCCACCTTCCTTCCTCAACAATCAGCGGTTCCCAACGGCTTCGCCATCTCCCTCGCCGGACCGCAGGGCCAGATCGTCGGAGGATTGGTCGCCGGCGCCTTGATAGCAGCGGGGACTGTGTTCATCATCGCCGCTTCCTTCAACAACCCGTCGTATCACAGGCTTCCAACGGAAGAAGAGCCTCGAAACTCAGTATCCACCGGAGATGGACATTCGCCGCCAGTCTCCGCCGGCGTTGATGATAACGGGCATGGTCAAGCGGCGTCGTGTGGGATGTCCATGTACAGCTGTCACATGCCATCGGATGTGATTTGGGCTCCAGCGGCTAGACCACCTTACTGA 828 0.5616 MKGEYVEQHPKSETSDMFSKLHHQNQSQPLHHPFPHHPFQLASADGGAATPNTAQKPNSSGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVQAIALFTRRKNMGLSILTGSGSVANVTLRQPSTTPGATVTFHGRFDILSLSATFLPQQSAVPNGFAISLAGPQGQIVGGLVAGALIAAGTVFIIAASFNNPSYHRLPTEEEPRNSVSTGDGHSPPVSAGVDDNGHGQAASCGMSMYSCHMPSDVIWAPAARPPY. 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01549 275 MobiDBLite consensus disorder prediction 214 245 - -
Seca3g01549 275 PIRSF ESCAROLA 4 270 IPR014476 GO:0003680
Seca3g01549 275 CDD DUF296 99 209 IPR005175 -
Seca3g01549 275 ProSiteProfiles PPC domain profile profile. 94 230 IPR005175 -
Seca3g01549 275 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 53 253 IPR014476 GO:0003680
Seca3g01549 275 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
Seca3g01549 275 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Seca3g01549 275 MobiDBLite consensus disorder prediction 1 18 - -
Seca3g01549 275 FunFam AT-hook motif nuclear-localized protein 98 228 - -
Seca3g01549 275 MobiDBLite consensus disorder prediction 46 62 - -
Seca3g01549 275 MobiDBLite consensus disorder prediction 1 89 - -
Seca3g01549 275 Gene3D - 98 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01549 Seca-Chr3 26716064 26716912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01549 1 275 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 59.044 3.20e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01549 - - gmx:100788098 407.912