Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01545 ATGGCAGAAGACGATGCAAAGCCTCTCAACTATATTCCAGAGGTTATATTGAAGAAGAGGAAAAGCAGTGAAGCATTGGCCTTGAGAAAAAAGGCGCAATTCCAGCAGAAAATTTTCCAAACCAGGAAAACCAAGGACTTCATCAAAAAGCCTGATGATTTCATTTTTGAATATCGCAACAGGGAGCTGGACCTTATTAGAATGAAACGAAGGGTAAAGAGGAAACTACCAGAACTATTGACCCCAAACACCAAGCCCATGATAATCATTCGGATACAGGGGAAAAAAGACATGCATCCTAAAACCAGAAAGGTCTTATACAGCTTGGGGTTAAGAAGAATATTCAGTGCTGTCTTTGTGAAGCCAAGTGAGGGAGTAATGGCCAAGCTGCAGAGAGTTGAACCATATGTTACCTATGGATATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGACATGCAAAAATAGATAAGCAAAAAGTTCCTTTGACGGATAATAACATTATTGAGCAGGAATTAGGAAAGTTTGGTACTGTATGCATAGAAGACATGGTACATCAAATTGATAATGTCGGTCCACACTTTAAGGAAGTTGTTAGATTTTTGTGGCCCTTTGAACTCAACAAGCCAGCAGAAGGATTGAAAGGATCAAAATCCCTGTACAAGGATGGGGGAGACACAGGGAATCGTGAGGAACTCATCAACGAACTAATCAACAAAATGAATTAA 738 0.3943 MAEDDAKPLNYIPEVILKKRKSSEALALRKKAQFQQKIFQTRKTKDFIKKPDDFIFEYRNRELDLIRMKRRVKRKLPELLTPNTKPMIIIRIQGKKDMHPKTRKVLYSLGLRRIFSAVFVKPSEGVMAKLQRVEPYVTYGYPNLKSIKELIYKKGHAKIDKQKVPLTDNNIIEQELGKFGTVCIEDMVHQIDNVGPHFKEVVRFLWPFELNKPAEGLKGSKSLYKDGGDTGNREELINELINKMN. 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01545 245 FunFam 60S ribosomal protein L7 86 190 - -
Seca3g01545 245 PANTHER 60S RIBOSOMAL PROTEIN L7 9 245 IPR039699 -
Seca3g01545 245 Gene3D - 87 192 IPR036919 -
Seca3g01545 245 Gene3D - 193 245 IPR036919 -
Seca3g01545 245 NCBIfam 60S ribosomal protein uL30 13 245 IPR005998 GO:0000463|GO:0003735|GO:0022625
Seca3g01545 245 Pfam Ribosomal protein L30p/L7e 88 137 IPR016082 -
Seca3g01545 245 CDD Ribosomal_L7_archeal_euk 89 245 IPR035808 -
Seca3g01545 245 Pfam Ribosomal L30 N-terminal domain 12 75 IPR012988 -
Seca3g01545 245 SUPERFAMILY Ribosomal protein L30p/L7e 88 245 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01545 Seca-Chr3 26613358 26618136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01545 1 245 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 53.200 1.79e-83 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01545 K02937 - gmx:100500005 403.675