Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01524 ATGGGAGAAGATTGTGGAACCTGGATACCACATATGCAATTTGGATGGCAATCACCAAATTTGAGTCCCCTCAATGTGGGGAAGCAGGATGGTATTTCTGCAGTTATGAACCATGGCATCAATATGGTTTCAAACAATGAGACAATGCCAGCTTTCATGTCCTCTGCACTACCTCATTTGCAATTAGGACATGCTAATGAACCACCCCATGGTTGGTTTTATTGTTTGCCTCGCTATCGACAGGGATTTAGTCCTGCTCCAAACTTCACTGCTGAGGAAAAACCTCATGCTGACCATGTGAAAAGTTTTAGGGATAAAATTGCTCCTTATGGTGAATCAAGCTCTTCTCAGAAACAATTCCTTGTTGTTGATCAGACCTGTGGTCGAACAACCATTGTTTATAGTTCTAGGTTTGGGAGTCCCAATGAGTGCCTCACTTCATGGCATTCAAAATTGCATGGTGCTAACTATTGGAGTGGGAATGAACCTTCTTTTAAAGGAGATTTGAATTTGAATTTGAATCACATGACTGGGCAAACTTTGGCTGATCAAGTTGATGAGAATCAGGGAACTGGTACTGAAAGCGAGATGCATGAAGACACTGAAGAAATTAATGCATTGCTTTACTCGGATAGTGATGGCTATTCTACTGAGGATGATGATGATGAAGTTACTAGCACAGGACATTCTCCCAGTACAATGACCACTCATGATAACCATAAAACCTTAAGGGCAACCGCAGAAGAAGTTGCAAGCTCTGCTGGGAAAGCCAAGAAGAGGAAGTTAATGGATGGTTATTATGATGACACACAGCTCATGGATACTGCTAGTTCTCTGAACCTGAACAAATCCTTTACCATGGGAGATGATGCAGAATCAAGATGTTCTGGTAGCAACAAAGAAAGATCATCAGGTGAAATGGGTTCCTTGAAGAAGATGAGAAAGGAGAAGATAAGAGAAGTTCTAAGTGTTCTTCAGAGCATAATCCCTGGCAGGAAGGATAAGGACCCAGTCATGCTTCTAGATGATGCCATACATTGCTTGAAATCCTTGAAACACAAGGCTAAAGAGCTCGGACTTAATGCCTTATAA 1092 0.4167 MGEDCGTWIPHMQFGWQSPNLSPLNVGKQDGISAVMNHGINMVSNNETMPAFMSSALPHLQLGHANEPPHGWFYCLPRYRQGFSPAPNFTAEEKPHADHVKSFRDKIAPYGESSSSQKQFLVVDQTCGRTTIVYSSRFGSPNECLTSWHSKLHGANYWSGNEPSFKGDLNLNLNHMTGQTLADQVDENQGTGTESEMHEDTEEINALLYSDSDGYSTEDDDDEVTSTGHSPSTMTTHDNHKTLRATAEEVASSAGKAKKRKLMDGYYDDTQLMDTASSLNLNKSFTMGDDAESRCSGSNKERSSGEMGSLKKMRKEKIREVLSVLQSIIPGRKDKDPVMLLDDAIHCLKSLKHKAKELGLNAL. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01524 363 MobiDBLite consensus disorder prediction 211 258 - -
Seca3g01524 363 MobiDBLite consensus disorder prediction 287 313 - -
Seca3g01524 363 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 358 IPR036638 GO:0046983
Seca3g01524 363 PANTHER TRANSCRIPTION FACTOR BHLH145 8 361 IPR037546 -
Seca3g01524 363 MobiDBLite consensus disorder prediction 294 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01524 Seca-Chr3 26247966 26250201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01524 71 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G50010 32.313 3.39e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01524 - - gmx:102668102 521.931