Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01520 ATGGGTTATCTCTCTTGCAATGCTGAATCTGCAATTGCCACCTGCGATCCCCACTATTGGGATCTCAAGAAGCGAAACACCACCACCAACAAAAAACAAACAAACACTCCTATCAGGGAGTTTCACTACACCGACCTCCTCGCCGCCACTAACGGCTTCTCCGCCGAAAGCTTCTTAGGCAAAGGCAGCCACGGCAGAGTTTACAGAGCCATCCTTGATGGCGGCAAACTCGTCGTTGCAGTCAAAACGACAAAACTCTCTTCCAAGCCTAAACACAACAAACACACCACCACCTGCACCGGTTGCGGTAACTGTACCAGTCCCGCAGAAAACGAGATCGAGATTCTTTCCCAAGTTCCAAGCCCTCGCCTCGTTAACCTCATCGGCTACTGCACAGACCCAAACGACAACAAATTAATTGTCGTCGAGTACATGCCTAACGGTTCGCTCCACGATCTCTTGCACTCTGCGGTTCGACCTCCCGGTTGGAACCGGAGAGTCCGGTTCGCGATGCAAGTTGCGAAAGCGGTTCAAGCACTTCACTGTTCCAACCCTCCGGTGATTCACCGTGACATAAAATCCTCCAACGTTTTGATCGATGAGGAGTGGAACGCTAGGCTCGGTGACTTCGGCCTCGCTCTAAGAGGACACGTGGAGGACGTTCGTGTGAAGTGCACACCACCTGCGGGTACGTTAGGGTACCTCGATCCATGCTATCTTGCGCCGGAGGATCTGAGCGCTAAGAGCGATGTCTTCAGTTTCGGGATCTTGTTATTGGAGATAATCAGCGGCAGGAACGCAATCGATGTTAATTATAGTCCGCCGTCGGTAGTGGATTGGGCGGTGCCGTTGGTTAAGCGCGGTGACTTCGCCGGAATTTGTGACCGGAGAATTGGAACGCCGTCGGATCCATCGGTGATGCGGCAACTTGCGGTGCTGGCGGCGAGCTGTGTTAGATCGACGGCGGAGAAGCGGCCGTCGATGGCGGAAGTTGTGGAGTGTCTTAAACTAGTGAGGAAGAGGATTCGTGCGTCGCCGATGTGGAGAAATTTGAAGCGGCGCGTGGCGCGTGTGGAGAGTGAGGAACCGTTGATGAGGTGGGAAGTGAATGATTGTGAGTGTGATAGGAGTGAGGAAGTTGTGAGGATAGTGAAGGGTGGGAGTGGGAGTGGGAGTGGGATCAGAAGGAACAGGAAAGTATCCAGTGTGACGAGTGTAGAGTATGAGAATAAGCCCTCCAATAAAGTAGTGAGGTCCAAGTCTTCTTCTGGTTCTGCAAGGAATGGGATTAAGATGCAGTTGGATTCGAATCCAAAAAAACTGGGTGGGTTTGGGTTTGGGTCTGGATCCTACCCGCACCAAACTGAGTATGGGTTTGGGAGAAGGAAAGGGAAAATGGCAGTGAAGAGGCTGAACAAATCAAAGTCTATGGGGGTATTGCAAGGACCTCGCCTTTTCCATTATGAGAGTGAGAATGACAATAATAATGATCCAATTAATTCGGCTATGTCCAAGTTGGTCATTACGGATAAGTTGGAAAGGAAAATGCTTGAAAAACCATTAGTTGACTCCCATCACATTTGGAGAAGAAGTGTGAGTACTAATAAGGGTAATGAAGGTCTCTGA 1626 0.5049 MGYLSCNAESAIATCDPHYWDLKKRNTTTNKKQTNTPIREFHYTDLLAATNGFSAESFLGKGSHGRVYRAILDGGKLVVAVKTTKLSSKPKHNKHTTTCTGCGNCTSPAENEIEILSQVPSPRLVNLIGYCTDPNDNKLIVVEYMPNGSLHDLLHSAVRPPGWNRRVRFAMQVAKAVQALHCSNPPVIHRDIKSSNVLIDEEWNARLGDFGLALRGHVEDVRVKCTPPAGTLGYLDPCYLAPEDLSAKSDVFSFGILLLEIISGRNAIDVNYSPPSVVDWAVPLVKRGDFAGICDRRIGTPSDPSVMRQLAVLAASCVRSTAEKRPSMAEVVECLKLVRKRIRASPMWRNLKRRVARVESEEPLMRWEVNDCECDRSEEVVRIVKGGSGSGSGIRRNRKVSSVTSVEYENKPSNKVVRSKSSSGSARNGIKMQLDSNPKKLGGFGFGSGSYPHQTEYGFGRRKGKMAVKRLNKSKSMGVLQGPRLFHYESENDNNNDPINSAMSKLVITDKLERKMLEKPLVDSHHIWRRSVSTNKGNEGL. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01520 541 Gene3D Phosphorylase Kinase; domain 1 16 144 - -
Seca3g01520 541 MobiDBLite consensus disorder prediction 394 429 - -
Seca3g01520 541 Gene3D Transferase(Phosphotransferase) domain 1 145 356 - -
Seca3g01520 541 SMART serkin_6 53 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01520 541 ProSitePatterns Protein kinases ATP-binding region signature. 59 82 IPR017441 GO:0005524
Seca3g01520 541 ProSiteProfiles Protein kinase domain profile. 53 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01520 541 PANTHER OS01G0253100 PROTEIN 29 338 - -
Seca3g01520 541 MobiDBLite consensus disorder prediction 388 429 - -
Seca3g01520 541 SUPERFAMILY Protein kinase-like (PK-like) 29 336 IPR011009 -
Seca3g01520 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Seca3g01520 541 Pfam Protein kinase domain 55 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01520 541 FunFam Serine/threonine-protein kinase-like protein 145 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01520 Seca-Chr3 26186703 26188328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01520 39 369 Receptor kinase-like Gene Family AT3G59420 40.774 9.29e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Seca3g01520 Pkinase 1.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01520 - - cam:101503747 679.863