Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01519 ATGGCTGCGTTGATGAAAAAATCAAATGGGGTCTACTTTCCTAGTCAGAAACTCTGCAAATGGTTCACTCAGATACTATTGGCAGTAGAATACCTACATTCAAATTTTGTTTTACACCGTGACCTAAAGTGTTCTAACATCTTTCTCACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTGTTAA 222 0.3964 MAALMKKSNGVYFPSQKLCKWFTQILLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLAC. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01519 73 Gene3D Transferase(Phosphotransferase) domain 1 1 72 - -
Seca3g01519 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01519 73 Pfam Protein kinase domain 10 68 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01519 73 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Seca3g01519 73 SUPERFAMILY Protein kinase-like (PK-like) 7 69 IPR011009 -
Seca3g01519 73 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01519 Seca-Chr3 26155794 26157390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01519 19 71 MAP Kinase Gene Family AT4G01370 50.000 3.73e-12 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca3g01519 Pkinase 9.4e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01519 K08857 - gmx:100780141 144.05