Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01517 ATGGATTTTGATGAGCACGAAGACCAAGAGGAAGAGGAGGAAGAAGAAGAGGACGAGGAAATGGGATTTCCAGTGGCGGCGGCGGCGGGTTATGACTCGCTTGGAAACTCAGCGGCGAGGTTGAAAATGAGCGGCGCCGTAGGAGCTGAGGGAGGTGCAACCACCACCACCACGACAGGTGGTCGAAAAAGTGGGCCCGCGGGGACAGTCAGGTACATGGAATGTCAAAAGAACCACGCCGTCGGTATTGGTGGTCACGCTGTCGACGGTTGCTGCGAGTTCTTGGCAGCCGGTGAGGAAGGTACGCTCGAGGCCGTAATTTGCGCTGCCTGTAACTGTCACCGGAATTTTCACCGAAAAGAGATCGACGGCGAAATCACCTCCTACCACCAGCCACGGCCACAGCCCCCGCTGCAGCCACAGTACCACCACCAATTCTCCCCTTACTACCACCGCGCAGCGCCACCGCCTGCAGCCGGTTACCTCCACCACCACATGGTAACTCCACCGCTTTCCCAGCACCGACCTTTAGCTCTTCCACCTGCGGCTTCGGGAGGGGGTTTCAGTAGAGACGAGGAGGATATGTCCAATCCGAGCAGCAGCGGCGGCGGAGGCGGTAGCGGAACGAAGAAAAGGCATAGGACAAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTTGCGGAGCGGTTAGGGTGGAGAATTCAGAAGCATGATGAAGGTGCGGTGGAGCAATTCTGTGCGGAAACTTGTGTGAAGAGACATGTGCTTAAGGTGTGGATGCACAATAACAAGCACACTCTTGGTAAGAAACCCTAA 822 0.562 MDFDEHEDQEEEEEEEEDEEMGFPVAAAAGYDSLGNSAARLKMSGAVGAEGGATTTTTTGGRKSGPAGTVRYMECQKNHAVGIGGHAVDGCCEFLAAGEEGTLEAVICAACNCHRNFHRKEIDGEITSYHQPRPQPPLQPQYHHQFSPYYHRAAPPPAAGYLHHHMVTPPLSQHRPLALPPAASGGGFSRDEEDMSNPSSSGGGGGSGTKKRHRTKFTQEQKDKMLAFAERLGWRIQKHDEGAVEQFCAETCVKRHVLKVWMHNNKHTLGKKP. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01517 273 SUPERFAMILY Homeodomain-like 195 271 IPR009057 -
Seca3g01517 273 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 72 121 IPR006456 -
Seca3g01517 273 Pfam ZF-HD protein dimerisation region 70 122 IPR006456 -
Seca3g01517 273 NCBIfam homeobox domain, ZF-HD class 210 266 IPR006455 -
Seca3g01517 273 MobiDBLite consensus disorder prediction 172 220 - -
Seca3g01517 273 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g01517 273 FunFam Zinc-finger homeodomain protein 2 195 271 - -
Seca3g01517 273 MobiDBLite consensus disorder prediction 1 28 - -
Seca3g01517 273 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 71 122 IPR006456 -
Seca3g01517 273 Gene3D - 195 270 - -
Seca3g01517 273 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01517 Seca-Chr3 26084662 26085483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01517 13 269 ZF-HD Transcription Factor Family AT4G24660 51.711 3.76e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca3g01517 ZF-HD_dimer 3.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01517 - - gmx:100820567 394.045