Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01506 ATGTACACTACTACTTCACAGTCACACACAGTAATGCCTGAGCCAGACCTCTCCTTAAACATCAGTCCCCCCTTTGTTGAGACCAAAGAAGTAGGAAGCTACAATGGATTAACATTGACCAACAAAATGCTTCACAATGACATGTGTTCAACCTCTGACTCTGGTAGCAGTAATGGAAGTGATTTAAGCCAAGAAAATGCCTCTTTCCACAACCTTGGTCATGAGCCAAAGTTGAGCTTAGGCTTTGAAAAGGTTGCTGATTTGAAGCCCCATCAAGTGCAGGGACTCTCAAGAAACTTCAACAATCACATCCATAACTACCAACCTCATTTCAAACGAAATAGTAGTACTAGAGTGATTCATGGTGTGAAAAGAAGCATCAGAGCTCCTAGAATGAGATGGACTACCACCCTCCATGCTCATTTTGTTCATGCTGTTCAGCTTCTTGGTGGTCATGAAAGGGCAACACCAAAATCTGTGTTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCTCATGTCAAGAGTCATTTGCAGATGTATAGAACAGTGAAGAGCACTGACAAAGGAGGAGCAGGTCATGGGCACAAAGGTATGGGATTGAGCCAAAAACCAACGCTTATTGTCAATCTGCATGGAGTCTCTGCTTGTGATGAGAGATCCGATTTGCCACAGCAGATGCAAAAATCTCAGAGGGCATCATGGCAATCATCAATAGAGTCAAATCCAGATAATTATAGACAAAAGCCCCAAAACAGTTTGGTTTATTCTCATCTCAAACGAAACCAAATCATGGTAAGTGGACAGAATTATGGAGGCGTGTCGAATTACATGAAGGAGAGGATGGATTCTAGTTCTTTGTCACATTCTGAAGTGATGCTTGATCTAGAATTTACCCTTGGAAGGCCCGCTTTGTCAAATGCTAATTAA 930 0.4204 MYTTTSQSHTVMPEPDLSLNISPPFVETKEVGSYNGLTLTNKMLHNDMCSTSDSGSSNGSDLSQENASFHNLGHEPKLSLGFEKVADLKPHQVQGLSRNFNNHIHNYQPHFKRNSSTRVIHGVKRSIRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGGAGHGHKGMGLSQKPTLIVNLHGVSACDERSDLPQQMQKSQRASWQSSIESNPDNYRQKPQNSLVYSHLKRNQIMVSGQNYGGVSNYMKERMDSSSLSHSEVMLDLEFTLGRPALSNAN. 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01506 309 SUPERFAMILY Homeodomain-like 127 184 IPR009057 -
Seca3g01506 309 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 12 305 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca3g01506 309 FunFam Myb family transcription factor 128 186 - -
Seca3g01506 309 MobiDBLite consensus disorder prediction 221 249 - -
Seca3g01506 309 MobiDBLite consensus disorder prediction 220 249 - -
Seca3g01506 309 Gene3D - 129 186 - -
Seca3g01506 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 130 183 IPR006447 GO:0003677
Seca3g01506 309 Pfam Myb-like DNA-binding domain 131 182 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01506 Seca-Chr3 25938457 25942991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01506 71 195 G2-like Transcription Factor Family AT5G42630 69.600 2.93e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g01506 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01506 - - gmx:100780143 382.489