Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01501 ATGCAGGCCTCAGGCTGCTTCCTCGTGCTCTCTTTCCTCTTCCTATCATCATCTTTCTCCTTTGCACTTTCCTCTGATGAAGCCTCTTTCATTGCTCGTCGCCAATTGTTACACCTTAGTGAGAAAGATGATTTACCTGATCACTATGCAGATAACTACAAAACAGATCTAAAATTCCCTAATTCTAAGCTCAAGAGTGCTTACATTGCACTCCAGGCATGGAAAAAAGCAATCTATTCTGACCCAACAAACTTCACAGAGAATTGGGTAGGCCCAGATGTTTGTTCCTACAATGGAGTTTTCTGTGCCGAATCTCTGGATGACCCAAAGACCGAAGTTGTGGCTGGGATTGATCTTAACCATGCAGACATTGCAGGTTACCTTCCTCCAGAGTTTGGTTTGTTAACTGATCTTGCTCTTTTGCATATTAACTCAAACAGGTTCTGTGGGGTTCTCCCAAAGAGCTTCACCAAGTTAAAGCTTTTACATGAGCTTGATATCAGTAACAACCGTTTTGTTGGTCCATTCCCAAAGTCTGTTCTTTCAATCCCAGATATCAAATACCTTGACCTCAGGTTCAATGACTTTGAAGGGGCTATACCTTCTGAGCTTTTCAACAAAACACTTGATGCCATCTTTTTGAACAACAACAGATTCACATCCACAATTCCAGAGAACATGGGGTCTTCTCCAGCTTCTGTTGTGGTTTTAGCTAATAACCATCTCAGTGGCTGCATTCCTGGAAGTGTTGGTGATATGAAAGGGACATTGAATGAGTTTATTTTGATTAACAACAACCTCACTGGTTGTTTGCCCTCAGACATTGGAAAGCTTGAACAAGTCTCTGTCTTTGATGTGAGCCAGAACTCATTTGTTGGTGTATTGCCAAGGACCTTCAAGGGGCTAAAAAATGTGGAGGAGATTTCAATTGCAAACAACAAGCTCACAGGTTTTGTGCCACGTGCCATATGTAGCTTGCCCAAATTGGTAAACTTCACATTCTCTTATAACTATTTCAATGGAGAGGAAGAAGGTTGTGTGCCTTCTAAAAAGGACAAGGACATTGTGTTGGATGATACCAACAATTGTATCCCAGATAGACCAAAGCAAAAGGCAGCAAATGTTTGCAATGTTGTCATAAGCAAGCCTGTTGAATGCAGTAAGGCACAATGTGGTAACCCATCTAGCTCCAATTCTCCATCTGAGAAGCCAACACCAAAACCTTCCCCTTCTCCTTCTAAACCTCCAAGTGAGAAGCAAACACCATCCTCACCCTCTAAGCCTCCTCCATCTGAGAACCCAACACCAAAGTCACCCCCTCAACCTACCCCTTCACCCTCCAACCCTCCAACTCAGAAGCAAACACCACCACCAGCACAACCCAAACCTAGCCCTTCACCCTCCAACCCTCCAACCCAGAAGCAAACACCACCACCAGCACAACCCAAACCTAGCCCTCCTCCATCCAATCCTTCACCTGAAAAACCAAAAACACCAGAACCAGCACAACCACCTCAAGAAGAATCACCACCAGAGGAGGATGATCCTCACAAGGAAGCACCAAGGCGACGAATAAGGTCTCCACCTCCACCAGTTCAATCCCCACCACCACCAGTTTATTCTCCACCTCCACCAGTTCAATCCCCACCACCACCGGTTCAGTCCCCTCCTCCACCAGTTCAATCCCCACCACCGCCGGTTCAATCTCCTCCTCCCCCAGTTCAATCCCCACCACCACCGGTTCAATCCCCTCCACCACCAGTCTACTCTCCACCACCTCCGGTTCACTCCCCTCCTCCACCAGTTCACTCTCCACCACCACCGGTCCAATCTCCTCCACCACCACCACCACCAGTCCAATCTCCACCGCCACCTGTCTATTCTCCACCACCACCAGTTAGCTCCCCTCCACCACCAGTCTACTCTCCTCCACCACCAGTTCAGTCCCCACCACCACCACCACCACCAGTCCACTCACCACCACCACCAGTGTACTCACCACCACCACCAGTGCAGTCTCCACCACCTCCTTCACATGATGACGATATCGTTCTTCCCCCTCATTTTGGCTCTTCATATGCTTCCCCACCTCCACCAGTCATTACCGGCTACTAA 2115 0.4775 MQASGCFLVLSFLFLSSSFSFALSSDEASFIARRQLLHLSEKDDLPDHYADNYKTDLKFPNSKLKSAYIALQAWKKAIYSDPTNFTENWVGPDVCSYNGVFCAESLDDPKTEVVAGIDLNHADIAGYLPPEFGLLTDLALLHINSNRFCGVLPKSFTKLKLLHELDISNNRFVGPFPKSVLSIPDIKYLDLRFNDFEGAIPSELFNKTLDAIFLNNNRFTSTIPENMGSSPASVVVLANNHLSGCIPGSVGDMKGTLNEFILINNNLTGCLPSDIGKLEQVSVFDVSQNSFVGVLPRTFKGLKNVEEISIANNKLTGFVPRAICSLPKLVNFTFSYNYFNGEEEGCVPSKKDKDIVLDDTNNCIPDRPKQKAANVCNVVISKPVECSKAQCGNPSSSNSPSEKPTPKPSPSPSKPPSEKQTPSSPSKPPPSENPTPKSPPQPTPSPSNPPTQKQTPPPAQPKPSPSPSNPPTQKQTPPPAQPKPSPPPSNPSPEKPKTPEPAQPPQEESPPEEDDPHKEAPRRRIRSPPPPVQSPPPPVYSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVQSPPPPVYSPPPPVHSPPPPVHSPPPPVQSPPPPPPPVQSPPPPVYSPPPPVSSPPPPVYSPPPPVQSPPPPPPPVHSPPPPVYSPPPPVQSPPPPSHDDDIVLPPHFGSSYASPPPPVITGY. 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01501 704 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Seca3g01501 704 Pfam Leucine rich repeat N-terminal domain 68 102 IPR013210 -
Seca3g01501 704 Pfam Leucine rich repeat 138 196 IPR001611 GO:0005515
Seca3g01501 704 Pfam Leucine rich repeat 281 337 IPR001611 GO:0005515
Seca3g01501 704 Gene3D Ribonuclease Inhibitor 66 233 IPR032675 -
Seca3g01501 704 Gene3D Ribonuclease Inhibitor 234 363 IPR032675 -
Seca3g01501 704 MobiDBLite consensus disorder prediction 510 525 - -
Seca3g01501 704 MobiDBLite consensus disorder prediction 401 506 - -
Seca3g01501 704 MobiDBLite consensus disorder prediction 388 704 - -
Seca3g01501 704 SUPERFAMILY L domain-like 68 346 - -
Seca3g01501 704 MobiDBLite consensus disorder prediction 526 682 - -
Seca3g01501 704 PRINTS Proline rich extensin signature 398 410 - -
Seca3g01501 704 PRINTS Proline rich extensin signature 415 431 - -
Seca3g01501 704 PRINTS Proline rich extensin signature 449 470 - -
Seca3g01501 704 PRINTS Proline rich extensin signature 437 449 - -
Seca3g01501 704 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01501 Seca-Chr3 25864452 25866566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01501 22 444 Trihelix Transcription Factor Family AT2G15880 59.529 3.87e-176 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01501 - - gmx:100780677 604.749