Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01499 ATGGCTATCCGTGTTACCTTCTCCTTTTCCGGCTACGTCGCCCAGAATCTCGTCTCCTCCGCCGGAGTTCGAGTCGCCAATTCTCGTTGCGTCCAAGAATGTTGGATCCTCTCTCGCTTCTTCGGAACTAACCAGAAACCAGACATCAACTCCGCCGGCGGCGTACGCAATTTCTATTCCGATCTCAGAAGGCCTAAATCCAATTCTTGGGCTGGAAACTCTGCTTGTGCCTCTGCCTATTCTACCCTCGCCGGAGAAATTCTCGGCGACAGCTGTAAGAACCCAATTATCTTAGGTTTGATTTCGATGATGAAGTCAACGGCTGGTGTTTCTGGGTCATCCACGGCGGCTATGGGTATAATGGGTATTTCTCCTCTTAAAACCTCTTCGATCATACCCTTCTTTCAGGGTTCGAAGTGGCTTCCTTGTAATGAGTCCCTTCCTGACCCCACAACATGGGAAGTGGATAAAGGTGGAACGCGCAGTGTTGTGAACGCGCAATCGGGTTTAAACGCAAGGGATTATGAGAGGCCTAGTTGGCTTTCGCGTTTTCTGAATATCTGTTCAGAGGATGCCAAGGCTGCGTTCACTGCTTTAACTGTTAGTGTCCTCTTCAAGTCTTTCTTGGCTGAACCTAAATCAATTCCCTCTGCTTCTATGTACCCAACTCTGGAAGTAGGTGACCGTGTTCTAACAGAGAAGGTTTCTTACTTCTTCAGAAGGCCTGATGTTTCAGATATAGTGATATTTAAAGCGCCACCCGGTGCGCAGGCATATGGTTATAGTTCATCTGATATATTTATAAAAAGGGTTGTGGCTAAAGCTGGTGACCTTGTTGAAGTTCGTGGAGGGAAACTATTGGTGAATGGTGAGGCTGAAGAAGAGGAATTCGTTTTAGAGCCTCTTAATTATGAGATAGCTCCAATGGTTGTTCCAAAAGGACATGTTTATGTGCTGGGAGACAATCGTAACAAGAGTTTTGATTCTAGTTACTGGTAA 999 0.4635 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECWILSRFFGTNQKPDINSAGGVRNFYSDLRRPKSNSWAGNSACASAYSTLAGEILGDSCKNPIILGLISMMKSTAGVSGSSTAAMGIMGISPLKTSSIIPFFQGSKWLPCNESLPDPTTWEVDKGGTRSVVNAQSGLNARDYERPSWLSRFLNICSEDAKAAFTALTVSVLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKVSYFFRRPDVSDIVIFKAPPGAQAYGYSSSDIFIKRVVAKAGDLVEVRGGKLLVNGEAEEEEFVLEPLNYEIAPMVVPKGHVYVLGDNRNKSFDSSYW. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01499 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 267 279 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca3g01499 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 311 330 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca3g01499 332 PRINTS Bacterial leader peptidase 1 (S26A) family signature 208 224 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca3g01499 332 Pfam Signal peptidase, peptidase S26 192 332 IPR019533 GO:0004252|GO:0006465
Seca3g01499 332 NCBIfam signal peptidase I 194 332 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca3g01499 332 ProSitePatterns Signal peptidases I signature 3. 316 329 IPR019758 GO:0004252|GO:0016020
Seca3g01499 332 ProSitePatterns Signal peptidases I serine active site. 217 224 IPR019756 GO:0004252|GO:0016020
Seca3g01499 332 FunFam Peptidase/ serine-type peptidase 217 332 - -
Seca3g01499 332 PANTHER SIGNAL PEPTIDASE I 147 332 IPR000223 GO:0006508|GO:0008236|GO:0016020
Seca3g01499 332 Gene3D Umud Fragment, subunit A 217 332 - -
Seca3g01499 332 CDD S26_SPase_I 211 332 IPR019533 GO:0004252|GO:0006465
Seca3g01499 332 SUPERFAMILY LexA/Signal peptidase 207 332 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01499 Seca-Chr3 25796022 25799445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01499 220 329 MADS-box Gene Family AT1G29960 29.730 5.76e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01499 K03100 - gmx:100817525 461.07