Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01489 ATGGAAGCAATGAATAGAAGCTCTTCCTCCACCACGTCTTCTTCGGATTCTTCCTCTTCAGAGTCTAATCCAAGGAATCCTAACAAACTTGATAGAATCAAAGGCCCATGGAGCGCTGAAGAAGACAGGATCCTGACCCGACTCGTAGAGCAACACGGGGCCCGAAATTGGTCCTTAATTAGCCGTTACATAAAAGGAAGATCCGGCAAGTCGTGCAGGCTTCGGTGGTGTAATCAGCTGAGCCCCACCGTGGAGCACCGTCCATTCTCCGCTGAAGAGGATGAAATCATTATAGCTGCTCATGCTCAATACGGTAACCGGTGGGCCACCATTGCCCGGTTACTACCGGGTCGAACCGATAATGCTGTAAAGAACCACTGGAACTCGACGCTGAAACGAAGGGCGAGTGGGAGTGGGTGTGGTTCTGTTGTTGTAACTGCCAATGAGGGGCCCACAGCCACTTGTTCTGGTGGTGTTCACCCTTGCATGCCGTTGGAAGATGATCCGTTGACCGCGTTGACTCTGGCTCCGCCGGGAATTGGTAATGGCGGTGCTGTGGCTGAACATCAAGTACCTCCTAAGAGTAGTGTTCCGTCGGGGTTTTGGGATGTGATGAGAGATGTTATTGCCAGAGAAGTGAGGGAATATGTGTCTTCTAATTTTTCTCACAACTCGGGTTTTCATTCATGA 690 0.5058 MEAMNRSSSSTTSSSDSSSSESNPRNPNKLDRIKGPWSAEEDRILTRLVEQHGARNWSLISRYIKGRSGKSCRLRWCNQLSPTVEHRPFSAEEDEIIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRASGSGCGSVVVTANEGPTATCSGGVHPCMPLEDDPLTALTLAPPGIGNGGAVAEHQVPPKSSVPSGFWDVMRDVIAREVREYVSSNFSHNSGFHS. 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01489 229 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Seca3g01489 229 Gene3D - 33 85 - -
Seca3g01489 229 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Seca3g01489 229 Gene3D - 87 145 - -
Seca3g01489 229 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g01489 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 135 IPR017930 -
Seca3g01489 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 80 IPR017930 -
Seca3g01489 229 CDD SANT 88 131 IPR001005 -
Seca3g01489 229 FunFam MYB transcription factor 34 85 - -
Seca3g01489 229 SUPERFAMILY Homeodomain-like 31 127 IPR009057 -
Seca3g01489 229 Pfam Myb-like DNA-binding domain 37 95 - -
Seca3g01489 229 SMART sant 85 133 IPR001005 -
Seca3g01489 229 SMART sant 33 82 IPR001005 -
Seca3g01489 229 CDD SANT 36 78 IPR001005 -
Seca3g01489 229 PANTHER MYB PROTEIN-RELATED 34 185 - -
Seca3g01489 229 MobiDBLite consensus disorder prediction 1 35 - -
Seca3g01489 229 FunFam Transcription factor MYB44 88 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01489 Seca-Chr3 25662078 25662767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01489 31 149 MYB Transcription Factor Family AT3G50060 73.109 7.24e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g01489 Myb_DNA-bind_6 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01489 - - lang:109327990 296.589