Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01480 ATGCAATCATCAAACGGCTCTGATTCGCAACCAACGGAGCAGAATCAGCAACGGCAACAGCAAACGCCGCCGCAGCCACTGCCACTGCCGCAACAGTGGGTGCCGATGCAATACCCAGCAGCGGCCATGGTAATGCAGCATCACATGTTGCCACCTCAACATTATGCACCGCCGCCACCGCAGCCCTACATGCCTTATCACCAGTACCAACCACAGGTGCCACATGTTCCACACCCTCATCAGGGATCCAGCATCGAGAACAAGACGATCTGGGTTGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTTGCTTCCACCGGCGAGATTTCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTTTATTCACATGGCACAGCTGAGAAAGTTTTACAGAGTTATGCTGCAATCTTGATGCCTAACACAGAGCAGCCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCAGATGTTACAGATAACATGTTGCATGAAACTTTTGCTACTAGATACCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAACACTGGCCGTTCAAAAGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTAAGGCTATGACTGAAATGAATGGTATTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAATCGTCTGGCTACCAGCAAGGAGGCCAGTCAAATGGCACATCAAACCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTTGGAGGACTTGACCCTAATGTTAATGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATTGTCTCTGTTAAGATACCTGTTGGAAAAGGGTGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAAAAGCTAAATGGCACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGTTGATTTCGGCAATCCCTGGAGTGGGGCGTATTATGGAGGACCTGTTTATGATGGTTATGGATATGGTTTGCCGCCTCCTCATGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGACACCAACAACAAGTAAGCTAA 1251 0.4612 MQSSNGSDSQPTEQNQQRQQQTPPQPLPLPQQWVPMQYPAAAMVMQHHMLPPQHYAPPPPQPYMPYHQYQPQVPHVPHPHQGSSIENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQSYAAILMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAADVTDNMLHETFATRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSKAMTEMNGIYCSSRPMRIGAATPRKSSGYQQGGQSNGTSNQSEADSTNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKQFRVDFGNPWSGAYYGGPVYDGYGYGLPPPHDPSIYAAAYGAYPVYGGHQQQVS. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01480 416 CDD RRM3_NGR1_NAM8_like 285 356 - -
Seca3g01480 416 Gene3D - 168 277 IPR012677 -
Seca3g01480 416 Gene3D - 278 388 IPR012677 -
Seca3g01480 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 168 IPR000504 GO:0003723
Seca3g01480 416 SUPERFAMILY RNA-binding domain, RBD 49 168 IPR035979 GO:0003676
Seca3g01480 416 MobiDBLite consensus disorder prediction 1 22 - -
Seca3g01480 416 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g01480 416 SUPERFAMILY RNA-binding domain, RBD 180 359 IPR035979 GO:0003676
Seca3g01480 416 FunFam Polyadenylate-binding protein RBP47B 87 167 - -
Seca3g01480 416 CDD RRM2_SECp43_like 180 259 - -
Seca3g01480 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Seca3g01480 416 CDD RRM1_SECp43_like 89 169 - -
Seca3g01480 416 MobiDBLite consensus disorder prediction 257 286 - -
Seca3g01480 416 Gene3D - 87 167 IPR012677 -
Seca3g01480 416 FunFam Polyadenylate-binding protein RBP47 272 388 - -
Seca3g01480 416 FunFam Polyadenylate-binding protein RBP47B 169 271 - -
Seca3g01480 416 SMART rrm1_1 287 354 IPR000504 GO:0003723
Seca3g01480 416 SMART rrm1_1 182 256 IPR000504 GO:0003723
Seca3g01480 416 SMART rrm1_1 89 164 IPR000504 GO:0003723
Seca3g01480 416 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 77 362 - -
Seca3g01480 416 MobiDBLite consensus disorder prediction 261 286 - -
Seca3g01480 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 151 IPR000504 GO:0003723
Seca3g01480 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 253 IPR000504 GO:0003723
Seca3g01480 416 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 288 351 IPR000504 GO:0003723
Seca3g01480 416 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 286 358 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01480 Seca-Chr3 25544565 25548880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01480 75 366 Eukaryotic Initiation Factors Gene Family AT4G34110 27.815 1.12e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01480 - - gmx:100819523 642.884