Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01463 ATGCCTTCTCCTGTTTACAAAGAAGTGATTATTGATCGCGTTTCAATACCTAGAGCTAGAAGGTTTTGTAGTGGTTATAATAAGTATAGGGATTATTCGAATCGGGTATATGCTTCAGATGAAGCCAGAGAGGAAGCCTTGGAGAAAGCTGAAAAGTTACAATCGGATTTGGAATCTGAATATCCAACCTTTATAAAATCAATGCTCCAGTCCCACGTCAGTGGGGGATTCTGGCTGGGCCTTCCAGTCTATTTCTGCAAGGAAAACCTTCCAAAACAGGACGAAGTGATTACTTTGGTCGATGAGGAAGGGAATGAGTATAAAACGATATATCTGCCTCGAAAAACAGGACTCAGTGGTGGATGGAAAGGATTTGCGGTTGCTCATAACCTAGCTGATGGGGACGCTTTAATTTTTCAGTTAATTAAACGCACTGCATTCAAGGTGTACATTATTAGAGCGAATAGTCCTCCAGAGGCAGAGGGTAAACAGCTAAAGTGA 501 0.4172 MPSPVYKEVIIDRVSIPRARRFCSGYNKYRDYSNRVYASDEAREEALEKAEKLQSDLESEYPTFIKSMLQSHVSGGFWLGLPVYFCKENLPKQDEVITLVDEEGNEYKTIYLPRKTGLSGGWKGFAVAHNLADGDALIFQLIKRTAFKVYIIRANSPPEAEGKQLK. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01463 166 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 157 IPR044837 -
Seca3g01463 166 ProSiteProfiles B3 DNA-binding domain profile. 64 155 IPR003340 GO:0003677
Seca3g01463 166 SMART B3_2 64 155 IPR003340 GO:0003677
Seca3g01463 166 SUPERFAMILY DNA-binding pseudobarrel domain 58 155 IPR015300 -
Seca3g01463 166 CDD B3_DNA 62 153 IPR003340 GO:0003677
Seca3g01463 166 Pfam B3 DNA binding domain 64 154 IPR003340 GO:0003677
Seca3g01463 166 Gene3D - 38 156 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01463 Seca-Chr3 25217598 25224497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01463 4 160 B3 DNA Binding Superfamily AT5G42700 63.694 2.41e-69 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca3g01463 B3 1.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01463 - - gmx:100794327 259.61