Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01462 ATGTCTAGTCGGAGTGAACACCAATCGGTTCCCCTTTCGGTGCTGCTGAAGCGTGAATTGGCAAACGAGAAAATCGAGAAGCCGGATGTTGTAATTATACACGGCCAAGCTAGCGAGAACAAGAAAGGAGAGGATTTCACGCTCGTAAAGACGGAATGTCAAAGGGTGGTGGGAGATGGGGTCTCTACATATTCTGTTTTTGGGCTTTTCGATGGACACAATGGACCTGCTGCTGCTATTTATGCCAAGGAGAATCTTCTAAACAATGTTTTAAGTGCAATTCCTCCAGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAACTGAAAGCACAAACATCGGGAACAACTGTAACTTTTGTAATTATAGAAGGATGGGTTATAACAGTAGCATCAGTTGGTGATTCTCGTTGCATACTTGAACCTTCTGAAGGTGGAATATATTACTTGTCAGCAGATCATAGACTAGAAAGCAACGAAGAGGAGAGGGTGCGCATCACTTCTAGTGGCGGTGAAGTTGGTCGGCTAAATACAGGTGGAGGTGCACAGGTTGGTCCATTGAGATGTTGGCCAGGTGGCTTGTGTCTCTCCCGATCTATTGGTGATATGGATGTTGGCGAATATATTGTCCCTGTACCATACGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGAAGGCTTATTATCAGCAGTGATGGGGTCTGGGATGCTTTAACTGCAGATATGGTTCTTGATTGTTGTCGTGGCATGTCAGCAGAGGCTGCAGCACCACATATTGTGAAAGAAGCTTTACAAGCAAAGGGACTTAGAGATGACACAACCTGCATCGTTGTTGATATATTAGCCCATGAGAAGCCACCTACTTCTGTTCCAACACAGAAGAAACCAGTAAAAGGAATGTTGAAGTCCATTTTCCGCAAAAAGTCCTCTGAATCATCTAATATTTTCAAAGAATACTTGGAGCCAGATGTGGTACGGGAACTATATGAGGAAGGATCTGCTTTTCTTTCAGAGAGGTTTGGGTTAGAAACAAAATATCCACTCTGCAACATGTTCAAGTTGTTCGTGTGTGCAGTGTGTCAAGCAGAGATTAAACCAGGGGAGGGTATTTCAATACATGAGGGTGCACTGAACCCGGCAAGATTGCGTCCCTGGGATGGACCTTTCCTTTGCATAAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAACGAACATCAGATAGACTAAGCAGCGGAAGTGACTAA 1293 0.4439 MSSRSEHQSVPLSVLLKRELANEKIEKPDVVIIHGQASENKKGEDFTLVKTECQRVVGDGVSTYSVFGLFDGHNGPAAAIYAKENLLNNVLSAIPPDLNRDEWVAALPRALVAGFVKTDKDFQLKAQTSGTTVTFVIIEGWVITVASVGDSRCILEPSEGGIYYLSADHRLESNEEERVRITSSGGEVGRLNTGGGAQVGPLRCWPGGLCLSRSIGDMDVGEYIVPVPYVKQVKLSTAGGRLIISSDGVWDALTADMVLDCCRGMSAEAAAPHIVKEALQAKGLRDDTTCIVVDILAHEKPPTSVPTQKKPVKGMLKSIFRKKSSESSNIFKEYLEPDVVRELYEEGSAFLSERFGLETKYPLCNMFKLFVCAVCQAEIKPGEGISIHEGALNPARLRPWDGPFLCISCQEKKEAMEGKRTSDRLSSGSD. 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01462 430 CDD PP2Cc 40 295 IPR001932 -
Seca3g01462 430 ProSiteProfiles PPM-type phosphatase domain profile. 29 295 IPR001932 -
Seca3g01462 430 Gene3D - 27 301 IPR036457 -
Seca3g01462 430 FunFam probable protein phosphatase 2C 12 34 301 - -
Seca3g01462 430 Pfam Protein phosphatase 2C 59 281 IPR001932 -
Seca3g01462 430 SUPERFAMILY PP2C-like 40 295 IPR036457 -
Seca3g01462 430 PANTHER PROTEIN PHOSPHATASE 34 294 IPR015655 GO:0004722|GO:0006470
Seca3g01462 430 SMART PP2C_4 19 293 IPR001932 -
Seca3g01462 430 SMART PP2C_SIG_2 56 295 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01462 Seca-Chr3 25210527 25215930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01462 1 430 PP2C-type Phosphatase Gene Family AT1G47380 78.241 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01462 - - gmx:100796959 783.482