Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01456 ATGTCGACATCCTCTGTCTCAAAAAAAAGAAAGCTGAAGGGTGTGGATGATGGTGGAAAATCTGTGTCAGAGTCAGACAATGCTCCACAAACAAAGTACGATGTTTTTGTTAACTTCAGGGGCGAGGACATCCGTGACAGTTTTCTTAGCCACTTGATTGAGGCTTTTCATCGGAAGAAAATAAAAGCCTTTGTAGATGATAAACTTCAAAGGGGAGATGAAATATGGCCATCACTTGTTGAAGCAATTGAGGGATCATTCATTTCCTTGATCATATTCTCACAAGACTATGCTTCTTCACGTTGGTGTTTGGAAGAAGTTGTGAAAATACTTGACTGCAGAGACAAGTACCAACAGATTGTAATACCTGTTTTCTATCGTGTACATCCCACATGTGTACGGCATCAAACGGGGACTTATGAAAATTCATTTGCTAAGCATGAAAAAAAATATAATTCCACCAAGGTGCAAATTTGGAAAGATGCTTTGAACAAATCTTCTAATCTAGCAGGAATTAAGTCATCTGATTTTCAAAATGATGCTGAGCTGGTTGAAGAAGTCGTCAATCTTTTGTTGAAGAGATTGTGTAAATACCCAGTTAACTCAAAAGGACTTATTCACTCAAAAAGATTTATAGGGATTGACAGACAAATGGCACATGAATCAGAACACCCTAGTGTTATTGGAATTTGGGGGATGGGCGGTATCGGCAAGACAACCATTGCAAGCGAAATATATAACAAACTGCGGTCTGAATATAATGGTTGCTGTTTTTTGGAAAATGTAAGAGAAGAATCATCAAGACATGGAATTAAATCTTTGAAAGAAAAGCTCTTTTCTAACTTATTAGGAGAAGCTGTGAAAATTGACACAACAAATGGATTGTCCAATGATATTGTGAGAAGGATTGGTGGTATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATTCAGATCAGATAGAAAACTTATTATTTGAAGCTCTTGATTGGCTTGGATCAGATAGTAGAATAATTGTAACAACTAGAGATAAGCAAGTGCTTACTGCTGGCAAAGCGGATGATATACACAAGGTTGGAGAGTTGAATTCCAGTGAAGCACTTGAGCTTTTCAATTTGAATGCCTTTAACCAAAGTCATTTGGAAACAGAGTATTATGAGCTATCAAAGAGGGTGGTTGATTATGCCAGTGGCATTCCATTGGTTCTTAAAGTTTTGGGATGTCTTCTTCACGGAAAAGATAAGGAAGTATGGGAAAGTCAATTAAATAAGATTGAAAAAATGCCAAACAAAAAAGTTTACGATGTAATGAGACTGAGTTATGATGATCTAGATCGCAAAGAGAAAAAATGTTTTTTAGATCTTGCATGTTTCTTCATTGGAATGATTGGGGAATTGAAAGTGGATGACATAAAAACTTTATTGAGAGATGGTGAAAGTGATAATTCAGTGACTGTTGTGTTTGAAAGGCTGAAAGATAAAGCTCTTGTAACTTTTTCTAAGGATAATGGTGTATCTATGCATGATATTATACGAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTATTGAAGACCCCGGAAGCCGTAGTCGGTTATGGGATTTTGATGACTGTAAGGAAGTACTGAAAAATGACAAGGGGACTGAGGCCATCAGAAGCATACGTGTGCCAATTTCAAATAAATGGAATGTTGAATTAGACTATTTCGAGTTAAGCCCCCTTGCATTTGCTAAGATGAGCAAACTACAATTTTTGGATTGCTTCAACATTTGTGGCTGTCCTCAAGGGCTTCAATCTTTGTCATCTGAACTAAGATATCTTCGTTGGAATAATTGCCCTCTAGCAACCTTGCCACAGAATTTTTCTGCCGAAAAACTTGTTATATTGAACTTGTCATCTAGCAAGATAATAAAACTTTGGGACGGAGTGCAGAATCTCGTGAATTTAAAACTAGTTTCACTCATTCGTTGCCGTAACCTGTCAGAGCTGCCAGACTTTTCCAAAGCCACAAATCTTGAAGTACTATTAGCCTCATTTTGTGATGACTTGTCAGGGGTGCATTCATCTATTTTCTCTCTCAAAAAGCTCAATACATTGGATCTTCGCTACTGCACTAATATTGTCAAACTTACCAGTGATACCCATTTGAACTCCCTCAGTTATCTCCAACTTGATTGTTGTTTTAGTCTGTGGAAATTCTCAGTGACATCAGAGAATATGAAAGGATTGTATTTAGCAAACACGATCTTCCGAGCATTGCCCTCATCATTTGAACTTCAGAGCAAACTTGAAATCCTATGCCTAAGAAGAAGTGACATTGAGGAGTTACCTTCATGCATGAAGAAACTTACAAGATTGCAATATCTAGACATAAGGGATTGCTTGAGGCTTAAAACAATACCAGAGCTTCCCCCCTCTCTTGTAACTCTCCTTGCTGGAGACAAATATGGACTACTGGAGACTGTATGCTTCCCTACGGTTGCTGAGCAATTCAAGGAAAATAGGAAAATGGTTGAGTTCTGGAATCACTTGAATTTGGATGAAGACTCTCTCATGGCTATTGAGTTCAATGCACGAATCAACTTGGAGAAATTTGCACACCAACATTTATCTGCACCAAAACATGATTATGATGATGATTCTTATCAAGCTGTGTACGTGTATCCAGGAAGCAGTGTTCCAGAGTGGTTGGAGCATAGAACAATGGAGGATTATATACTTATTGATCTCTCTTCTACTCCACGTTCCCCTCAGTTGGGCTTCATTTTCTGCTTCATCATTACAGAGCTGCTATTTGAAATCACTATCAGTGATGGTGCATGTGAAGGTAATGAAGAGGGTAGTGCTACAATGTGCATACGTAGACCTAGCGAAATTGTTTCAGATCATGTGTGTTTGATGTACCACCAAATATGTTCTCACTACCTAAATAGCAGAACCACAAATCTAACAAGATTTAAAATCAAGGTTACAACAACGAAGGGATCTGGTCCGACTTTTGCAAAATTGCATCGGGTGGTGTTAAAAGGATTTGGGGTCAGCCCAATAAACCCCTTGACAATGACACATCGGAGTTTCTCTCAACAAATGGAAGTGTGTGACTCAATATCTCAATTTCATTAA 3126 0.3807 MSTSSVSKKRKLKGVDDGGKSVSESDNAPQTKYDVFVNFRGEDIRDSFLSHLIEAFHRKKIKAFVDDKLQRGDEIWPSLVEAIEGSFISLIIFSQDYASSRWCLEEVVKILDCRDKYQQIVIPVFYRVHPTCVRHQTGTYENSFAKHEKKYNSTKVQIWKDALNKSSNLAGIKSSDFQNDAELVEEVVNLLLKRLCKYPVNSKGLIHSKRFIGIDRQMAHESEHPSVIGIWGMGGIGKTTIASEIYNKLRSEYNGCCFLENVREESSRHGIKSLKEKLFSNLLGEAVKIDTTNGLSNDIVRRIGGMKVLIVLDDVNDSDQIENLLFEALDWLGSDSRIIVTTRDKQVLTAGKADDIHKVGELNSSEALELFNLNAFNQSHLETEYYELSKRVVDYASGIPLVLKVLGCLLHGKDKEVWESQLNKIEKMPNKKVYDVMRLSYDDLDRKEKKCFLDLACFFIGMIGELKVDDIKTLLRDGESDNSVTVVFERLKDKALVTFSKDNGVSMHDIIREMAWEIVRQESIEDPGSRSRLWDFDDCKEVLKNDKGTEAIRSIRVPISNKWNVELDYFELSPLAFAKMSKLQFLDCFNICGCPQGLQSLSSELRYLRWNNCPLATLPQNFSAEKLVILNLSSSKIIKLWDGVQNLVNLKLVSLIRCRNLSELPDFSKATNLEVLLASFCDDLSGVHSSIFSLKKLNTLDLRYCTNIVKLTSDTHLNSLSYLQLDCCFSLWKFSVTSENMKGLYLANTIFRALPSSFELQSKLEILCLRRSDIEELPSCMKKLTRLQYLDIRDCLRLKTIPELPPSLVTLLAGDKYGLLETVCFPTVAEQFKENRKMVEFWNHLNLDEDSLMAIEFNARINLEKFAHQHLSAPKHDYDDDSYQAVYVYPGSSVPEWLEHRTMEDYILIDLSSTPRSPQLGFIFCFIITELLFEITISDGACEGNEEGSATMCIRRPSEIVSDHVCLMYHQICSHYLNSRTTNLTRFKIKVTTTKGSGPTFAKLHRVVLKGFGVSPINPLTMTHRSFSQQMEVCDSISQFH. 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01456 1041 SUPERFAMILY "Winged helix" DNA-binding domain 431 544 IPR036390 -
Seca3g01456 1041 Gene3D Ribonuclease Inhibitor 490 870 IPR032675 -
Seca3g01456 1041 SUPERFAMILY L domain-like 570 814 - -
Seca3g01456 1041 Pfam Leucine Rich Repeat 626 645 IPR011713 -
Seca3g01456 1041 SUPERFAMILY Toll/Interleukin receptor TIR domain 23 171 IPR035897 -
Seca3g01456 1041 PRINTS Disease resistance protein signature 692 708 - -
Seca3g01456 1041 PRINTS Disease resistance protein signature 227 242 - -
Seca3g01456 1041 PRINTS Disease resistance protein signature 302 316 - -
Seca3g01456 1041 PRINTS Disease resistance protein signature 396 410 - -
Seca3g01456 1041 SMART till_3 32 169 IPR000157 GO:0007165
Seca3g01456 1041 Gene3D - 30 197 IPR035897 -
Seca3g01456 1041 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g01456 1041 FunFam Disease resistance protein (TIR-NBS-LRR class) 29 197 - -
Seca3g01456 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 455 IPR027417 -
Seca3g01456 1041 ProSiteProfiles TIR domain profile. 31 195 IPR000157 GO:0007165
Seca3g01456 1041 Pfam NB-ARC domain 222 442 IPR002182 GO:0043531
Seca3g01456 1041 Pfam TIR domain 32 195 IPR000157 GO:0007165
Seca3g01456 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 33 821 IPR044974 GO:0006952
Seca3g01456 1041 Gene3D - 198 355 IPR027417 -
Seca3g01456 1041 Gene3D - 361 445 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01456 Seca-Chr3 25152081 25155854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01456 15 803 WRKY Transcription Factor Family AT4G12020 31.515 2.36e-90 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01456 - - aprc:113850949 1145.57