Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01439 ATGGACATCATGATGATGATGATGCAACTCCCTGAATTTTCTGCACCTAATAACTGTCACGACGGTTTTCCACCGTCGGAAGAGTTCTGTGGTGCTACTACTAACAATATACGCAGTACTACTACTATGCCACTAGCAGATTTAATAGATAATAACTCTCCTATGCCTTGGTCCTCATTCACACACATACCATCCACAACCACAATCTCTTTCGCTAATAACCCTATGCTTCAACAACAAGAACAAACGACGTCGTCAAATTGGAAAGCCACCACCGCGAACGAGTCGTCGGAGAAGCGGAACTCGATGGCGGCGATGAGAGAGATGATATTCAGGATAGCGGCGATGCAGCCAATACACATAGACCCTGAGTCAGTGAAGCCACCGAAGAGAAGGAACGTGAAGATTTCAAAGGATCCACAGAGCGTGGCGGCGCGTCACCGGAGAGAAAGGATAAGTGAGAGAATAAGGATACTGCAGAGATTAGTGCCTGGAGGGACTAAGATGGACACTGCTTCTATGTTGGATGAAGCTATTCATTACGTCAAGTTTCTCAAGACACAGGTTCAGTCACTTGAACGAGCCAGCTCTGTCAATAATAATACTGTAGGGATAGGGTTCCCTGTTGCAATGTCTAGTAGGAGTACTGTTCCCACCCCTAATTATCATCTTCCTCTACCTAAGCCTTATCAACCCCTAAATGTTGAGTATTATGGAGAATAG 723 0.4537 MDIMMMMMQLPEFSAPNNCHDGFPPSEEFCGATTNNIRSTTTMPLADLIDNNSPMPWSSFTHIPSTTTISFANNPMLQQQEQTTSSNWKATTANESSEKRNSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASSVNNNTVGIGFPVAMSSRSTVPTPNYHLPLPKPYQPLNVEYYGE. 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01439 240 SMART finulus 142 191 IPR011598 GO:0046983
Seca3g01439 240 MobiDBLite consensus disorder prediction 78 100 - -
Seca3g01439 240 CDD bHLH_AtIND_like 137 193 - -
Seca3g01439 240 Gene3D - 135 203 IPR036638 GO:0046983
Seca3g01439 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 140 195 IPR036638 GO:0046983
Seca3g01439 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Seca3g01439 240 FunFam BHLH transcription factor 139 203 - -
Seca3g01439 240 Pfam Helix-loop-helix DNA-binding domain 145 185 IPR011598 GO:0046983
Seca3g01439 240 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 42 221 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01439 Seca-Chr3 24904441 24905163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01439 102 203 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 87.255 3.86e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca3g01439 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01439 - - gmx:100788158 271.552