Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01437 ATGGCTCTTATGCTAGAGAACTGTGAAGGCATTTTACTGTCATTAGAGTCACACAAAGCAGTTCCAGCACCTTTCCTGACGAAGACATACCAACTAGTAGACGATCCCGCCACAGATCACATAGTCTCTTGGGGAGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCTAGGGACCTTCTCCCTAACTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTGCCAGATAGATGGGAGTTTGCTAATGAATTCTTCAAGAAAGGAGAGAAGCATTTGCTTTGTGAGATCCATAGAAGGAAAACTGCTCAGCCTCATCAACAACAACCAGACAGAATGAATCATCATCATCATCCACTTGGAGGATCAGTGAATGTTCCTTCTTTCTTTCCATTCTCAAGCAATAGAGTGAGTATCTCTCCTCCCAATGACTCGGATGAGCAACTCAATAATTGGTGTGACTCTCCACCACTCACTTCTCCAAGAGTAACAAACTACAACACTTCAGTAACCGCTCTTTCAGAGGACAATGAGAGACTCAGGAGAAGCAACAACATGCTCATGACGGAGCTTGCACACATGAAGAAGCTCTATAATGACATAATCTACTTCGTTCAGAATCATGTCAAACCAGTGACTCCAAGCAACTCTTACACTCCTTCTTTCCTACTCTGCAATACACCACAACAACCTTCCACTACTAGTAATGTTTCAATGCTGCAACAAAGGCCAATGAACCAGCTTCTCGGCTATTATTCTTCAACTAACCCTAAGCAATATTCCACAACTCAACCTCATGTTGTGAACTCTTCCAGTCCAACCAACACATCAAGGAGCTCTATAACGGTTGTGGAAGGTCCTAACAGTAACAGCTGCAAGACGAAGCTTTTTGGAGTATCTCTTCAGTCTAAAAAAAGAGTGCACCCTGAGTATGGATCTAATAATCCAATTAATTCGGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAAGATGACTTGGGTTTGAATCTCATGCCTCCTTCCACTTGTTAG 1074 0.4348 MALMLENCEGILLSLESHKAVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPHQQQPDRMNHHHHPLGGSVNVPSFFPFSSNRVSISPPNDSDEQLNNWCDSPPLTSPRVTNYNTSVTALSEDNERLRRSNNMLMTELAHMKKLYNDIIYFVQNHVKPVTPSNSYTPSFLLCNTPQQPSTTSNVSMLQQRPMNQLLGYYSSTNPKQYSTTQPHVVNSSSPTNTSRSSITVVEGPNSNSCKTKLFGVSLQSKKRVHPEYGSNNPINSETNKARLVLEKDDLGLNLMPPSTC. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01437 357 Gene3D - 17 116 IPR036388 -
Seca3g01437 357 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 FunFam Heat stress transcription factor B-4 17 115 - -
Seca3g01437 357 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 277 IPR027725 -
Seca3g01437 357 MobiDBLite consensus disorder prediction 273 301 - -
Seca3g01437 357 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca3g01437 357 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01437 Seca-Chr3 24876586 24878201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01437 1 356 HSF AT1G46264 59.318 2.01e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca3g01437 HSF_DNA-bind 2.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01437 K09419 - gmx:100781389 571.622