Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01434 ATGCAAAGGCAGGGAGGTACAATTGGTTCCATGTCTGAAGCCTTAGAATTTGATTGTGGATCTACATCAAGTAATGCTACTGCAGATCAGCAGATTTGCTGGAATAATGTGCGAAATCCTGCAGAAAATCAAATACCTGATTATATACTCTCTCCTAGTGATATAAACCCATCTTATGTGAATTCAATAAATCATGAATGGCAAAATTTGAGTGGATGGAGCTTAGGCGGGCCAAGTTCCAGTAATGCGCCAAATGAACTTGACAATAACGAGCAGAAAAGAGAGATTGAATGGTCATCATCCATAAGTGCTGGTGCATTAGCTGGTCCAAGGGTAGAAGACAGGCGCCTTGAACCAAGCAATCCTCTTTCACTGAACAATGTCAATACTGGTCCTGTGTATATGCGCAGCTCCAATTCTCATTTGATGTCCCAGAATCTCAACTTAAATGCAGGTTTAGCAGACAGTGGCAGTAATGATAGTCAACATCTGGAGCACCCTAACTTATACAGGTCTAGTGAATCAGTAAATGAGTGTAGTCCACCTAATATTGGTTCTGGTTCTTTTCTGCTTCCTTCTGGAAATAATGGCTTTCTGGTAGAAGATACTGATGGTAGGCCAGGTTGTTCTCTGGACACTCGACGTGTGTCTTGTAAAAGAAAAGCTGTTGAAGTAAATACTGGACAATCTTCAGATGGTGGCACTTCTAGCTACAGTCAGCATACAGATGGTAGTGGTTGGCACACCATTCCTACTCAGGATAATGCTGGGAGCAGTTCAAGCAGGTCTATTTCATCAGAGCAGTTAAATGCAAGGCTTGGCCTGGCTATGGGGGATGAAGCCTCTGAAAGTGTTCCTGATTCAGACATTGGAGGAAGCTCAGAAAGCTTCCACAGGAATTTACGTTTGAGGATAAATCCTTCAATCCAACAAAATTCCAATCCTCCCACTGCATTCTCAACTGGGAGCATGATTAGGCATCCTGGTGCTCCTTCTTCCTCTCACGTGTCACAAAGGTTTCATCCTGTTGATAATTCTCTGTACTTGAGGTCAGCTCCAGTGATAGATAATATAATTCCTCAAAGTCAGCCACTTGTAATCCATGTGCCTGCTTTGCCAAGGAATAGACAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACATGCATTCGTCAAACTCAATTATATGTGCAGACAGGGATAATCTACCACAGGAGGATGCAAACTCAAGAAGTGTGTCTAGAAATATTTTAGAACACCCAGTATTTGTACCTCCAACTGATTTACGAAATTTGGTTCAAAATCCAACATTTGGAGCTTCAAGTTCAAGTAGTGCAAATTTAAGCATTCCAGGAAATGTTGCTTCTTCATCAAGGACTGGATCAAATTCAGCTACCAATCCCTCATCTGCCTCAACCTGGGTCTCTCGTCCTAATCCTCCACAGCATCCCCGGAGGTTATCTGAATATGTCCGTCGCTCCTTGTTTTCTCCTGGTTCTGATGCTACTGGAGGTCCAAGCAACAACTATTCTTCCTTGCGCTCTGGTCCTTCTACATCTGAATTGAGGGCGTTATCATCAGGGGCTCACTCAAGATCATCTTCATGGTTGGAGAGGCAAGGAGATAGTGACTTTGGAATTCCCTATTCATTACGTACTTTATCTGTTGCTAGTGAAGGCAATGGTAGACTTCTATCTGAGCTCCGCAATGTATTGGGCCTTATGCGTAGAGGTGGGAACCTTCGATTTGAGGATGTTATGATCCTTGATCAATCAGTGATTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGAGACTTGATGTTGATAACATGTCGTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTCAGTACTGGATTGAGTGAGGAAACAATATTGAAACTTTTGAAACTGAAGAAGTACTCAATTGAAACAGGATCTCAGCTTGATGCAGAACCCTGTTGTGTTTGTCAGGAGGATTACAGTGATGGAGATGATATTGGAACGCTTGATTGTGGCCATGATTTCCATAACAACTGTATTAAACAGTGGTTAATGCATAAGAATCTGTGTCCCATTTGTAAAACAACGGGCTTGTCAACATGA 2127 0.4241 MQRQGGTIGSMSEALEFDCGSTSSNATADQQICWNNVRNPAENQIPDYILSPSDINPSYVNSINHEWQNLSGWSLGGPSSSNAPNELDNNEQKREIEWSSSISAGALAGPRVEDRRLEPSNPLSLNNVNTGPVYMRSSNSHLMSQNLNLNAGLADSGSNDSQHLEHPNLYRSSESVNECSPPNIGSGSFLLPSGNNGFLVEDTDGRPGCSLDTRRVSCKRKAVEVNTGQSSDGGTSSYSQHTDGSGWHTIPTQDNAGSSSSRSISSEQLNARLGLAMGDEASESVPDSDIGGSSESFHRNLRLRINPSIQQNSNPPTAFSTGSMIRHPGAPSSSHVSQRFHPVDNSLYLRSAPVIDNIIPQSQPLVIHVPALPRNRQSFRWSGGSSSRNMHSSNSIICADRDNLPQEDANSRSVSRNILEHPVFVPPTDLRNLVQNPTFGASSSSSANLSIPGNVASSSRTGSNSATNPSSASTWVSRPNPPQHPRRLSEYVRRSLFSPGSDATGGPSNNYSSLRSGPSTSELRALSSGAHSRSSSWLERQGDSDFGIPYSLRTLSVASEGNGRLLSELRNVLGLMRRGGNLRFEDVMILDQSVISGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEETILKLLKLKKYSIETGSQLDAEPCCVCQEDYSDGDDIGTLDCGHDFHNNCIKQWLMHKNLCPICKTTGLST. 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01434 708 ProSiteProfiles Zinc finger RING-type profile. 661 702 IPR001841 -
Seca3g01434 708 FunFam E3 ubiquitin-protein ligase MBR2 629 706 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 107 132 - -
Seca3g01434 708 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 707 IPR045191 GO:0061630
Seca3g01434 708 MobiDBLite consensus disorder prediction 435 480 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 435 539 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 223 265 - -
Seca3g01434 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 705 IPR013083 -
Seca3g01434 708 MobiDBLite consensus disorder prediction 220 265 - -
Seca3g01434 708 SMART ring_2 661 701 IPR001841 -
Seca3g01434 708 MobiDBLite consensus disorder prediction 501 539 - -
Seca3g01434 708 Pfam Ring finger domain 661 702 IPR001841 -
Seca3g01434 708 MobiDBLite consensus disorder prediction 151 184 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 75 94 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 380 400 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 308 338 - -
Seca3g01434 708 MobiDBLite consensus disorder prediction 380 415 - -
Seca3g01434 708 SUPERFAMILY RING/U-box 648 704 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01434 Seca-Chr3 24836969 24844889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01434 35 708 C3H Transcription Factor Family AT2G15530 34.435 1.66e-78 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01434 - - gmx:100783014 1103.2