Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01432 ATGAGTTCCCCTGCCGTTCTTCGCGTTTCAGAATGCTTCATCAAGCCGCAGCACCCCACCCAAGAAGATGCAAACCAACTTTACTATTTAACCCCTTCAGATATTGCTATGTTGACTGTCAACTACATCCAGAAAGGCCTTCTCTTCAAGAAGCCTGTTAATCAACAAGATTTCATCAATAATCTCTTGTATAAGCTCAAACACTCTCTTTCTCTCGCCCTCATTCATTTCTATCCACTGGCTGGCCGCCTCGTTACCAAAACATCCCAAGATCCTCCCTCTTATTATGTTTTCGTAGATTGCAGTAACAGTGCCGGAGCCAGATTCATCTATGCAACTTTAGATATGACCATATCTGACATCCTCTCCCCAATTGATGTCCCACCCATTGTTCAGTCATTTTTTGACCACCACAAAGCAGTCACCCATGACGGTCATACCATGCCTTTATTGTCCATCCAAGTCACTGAGCTTGTTGATGGAATTTTTATTGGCTGTTCCATGAACCACTGTATTGCTGATGGGACTTCCTATTGGAATTTCTTTAATACATGGTCTCACATCTTTCAAGCTCAAGGGCAAGTTCCGCACCCACCCATTCACAATCGCTGGTTTCCAGAAGGTTGCGGTCCACTAATCAATCTCCCCTTCAAACATCATGATGAGTTTATTAGCAGATATGAAACACCAAAACTTAGAGAGAGGGTCTTTCACTTTTCAGCAGAGTCCATTGCAAAACTGAAAGCAAAGGCCAACTTAGAGTCAAATACAACCAAAATCTCTTCATTCCAGTCACTGTCAGCACTCGTTTGGAGATCCGTAATTCGTGCGCGCCGCCCATCATATGACCAGAGAACCAGTTGCAAGTTGGCCACAAACAATCGATCAAGAATGGAACCGCCTCTGCCTCAGGAATATTTTGGAAACTCAATTTATGTAGTTGGTGCAGAGGCAACGGTAGGGGAATTGGTTGAGAAGGATCTGGGATGGGCAGCATGGAAGTTGCATCTGGCTGTTGCAAACCATAACGACAGAGCGGTGCGCCAGTTCCTTAAAGAATGGGTACAGTCTCCTGTCGTCTTTCAACCGGGTCGGTTATTTGACCCGTTTACTGTGATGATGGGTAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCGGTAGCGGTTAGAAGTGGGTATGCTAACAAATTTGATGGAAAAGTGACATCATATCCAGGTCATGAAGGAGGCGGGAGCATTGATTTGGAAATGTGTCTTTCGGCAGATACAATGAGTGCGCTGGAATCAGACGAGGAATTCAAATGCTTCATCAAGCCGCAGCACCCCACCCAAGATGCAAGCCAACATTGCTATTTAGCACCTTTAGATATTGCTACGTTGAATGTCAACTACATCCAGAAAGGCCTTCTCTTCAAGAAGCCTGAAGATTTCATTGATAATCTGTTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCCCTCTTCCATTTCTATCCATTGGCTGGCCGCCTTGTCACTCAAAAAACCCAACACCCTCCCTCTTATTCTGTTTTCATTGATTGCAGTGACAATAATTCCGGAGCTAGATTCATCTATGCAACTTTGGACATCACCATATCCGACATCCTCTTCCCCGTTGATGTTCCACCACTTGTTCAGTCCTTGTTTGATCTTAACAGAGCAATCAACCACGATGGTCACACCTTGCCCTTGTTATCCATCCAAGTCACTGAACTTGTGGACGGTGTTTGCATAGGTTGTTCCATGAACCATAGCATTGGTGACGGGACTTCTTTTTGGAACTTCTTTAATTCATGGTCTCACATCTTTCAAGCTCAATGGCAAGGTTCACACAGACCTATTCACAATCGCTGGTTTCCAGAGGGTTGTGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAGCAGATTCGAATCACCCAAACTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCGAAACTGAAAGCAAAGGCGAACTTACAATCAAATAGCACCAAAATCTCTTCATTCCAATCCTTATCAGCACATGTTTGGAGATCCATAACTCGCGCGCGGGGTCTAACATATGATCAGATAACCAGTTGCAAGTTAACCATAAACCATCGACCAAGAATGGAACCTCCTCTGCCGAAAGAGTACTTTGGAAACTCAATTGGTATGGTGAGTGCAGAGGCGAAGGCAGGGGAATTGGTTGAGAAGGATCTGGGATGGGCAGCATGGAAGTTGCATCTGGCTGTTGCAAACCGTAACGATGAAGAGGTGCGACGGTTACTCAAAGAATGGTCGCAATCTCCTGTTGTATTCCAGCTTGGTCACCACTTTGAAGCCAACAGTGTGACGATGTCAAGTTCACCAAGGTTCAACATGTATGGGAATGAATTTGGAATGGGGAAAGCTGTGGCGGTTTTGAGTGGCTATGCCAATAAATTTGATGGCAACGTGACAGGATATGAAGGATATGGAGGAGGGGGAAGCATAGATTTGGCTGTGTCCCTTTTGCCTGATGCAATGAGAGCCCTGGAATCAAACGAGGAGTTCATGGAGGCAGTTTCTGTGCCCAATCCCTTTTACTAG 2631 0.4496 MSSPAVLRVSECFIKPQHPTQEDANQLYYLTPSDIAMLTVNYIQKGLLFKKPVNQQDFINNLLYKLKHSLSLALIHFYPLAGRLVTKTSQDPPSYYVFVDCSNSAGARFIYATLDMTISDILSPIDVPPIVQSFFDHHKAVTHDGHTMPLLSIQVTELVDGIFIGCSMNHCIADGTSYWNFFNTWSHIFQAQGQVPHPPIHNRWFPEGCGPLINLPFKHHDEFISRYETPKLRERVFHFSAESIAKLKAKANLESNTTKISSFQSLSALVWRSVIRARRPSYDQRTSCKLATNNRSRMEPPLPQEYFGNSIYVVGAEATVGELVEKDLGWAAWKLHLAVANHNDRAVRQFLKEWVQSPVVFQPGRLFDPFTVMMGSSPRFNMYGNEFGMGKAVAVRSGYANKFDGKVTSYPGHEGGGSIDLEMCLSADTMSALESDEEFKCFIKPQHPTQDASQHCYLAPLDIATLNVNYIQKGLLFKKPEDFIDNLLEKLKHSLSLALFHFYPLAGRLVTQKTQHPPSYSVFIDCSDNNSGARFIYATLDITISDILFPVDVPPLVQSLFDLNRAINHDGHTLPLLSIQVTELVDGVCIGCSMNHSIGDGTSFWNFFNSWSHIFQAQWQGSHRPIHNRWFPEGCGPLINLPFKHHDEFISRFESPKLRERIFHFSAESIAKLKAKANLQSNSTKISSFQSLSAHVWRSITRARGLTYDQITSCKLTINHRPRMEPPLPKEYFGNSIGMVSAEAKAGELVEKDLGWAAWKLHLAVANRNDEEVRRLLKEWSQSPVVFQLGHHFEANSVTMSSSPRFNMYGNEFGMGKAVAVLSGYANKFDGNVTGYEGYGGGGSIDLAVSLLPDAMRALESNEEFMEAVSVPNPFY. 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01432 876 Gene3D - 9 211 IPR023213 -
Seca3g01432 876 FunFam Tryptamine hydroxycinnamoyl transferase 218 436 - -
Seca3g01432 876 FunFam Tryptamine hydroxycinnamoyl transferase 644 862 - -
Seca3g01432 876 Pfam Transferase family 12 439 - -
Seca3g01432 876 Pfam Transferase family 442 866 - -
Seca3g01432 876 Gene3D - 439 635 IPR023213 -
Seca3g01432 876 Gene3D - 647 862 IPR023213 -
Seca3g01432 876 Gene3D - 221 435 IPR023213 -
Seca3g01432 876 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01432 Seca-Chr3 24808717 24816585 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01432 489 860 Monolignol Biosynthesis Gene Families AT5G48930 28.792 3.74e-35 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01432 - - gmx:100787228 715.687