Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01428 ATGAGTTCCCCTGCCGTTCGTCGCGTTTCAGAATGTTTTATCAAACCGCTGCACCCAACTCAAGAGTCAAACCATATCTGTTATTTAACCCCTTGGGACATTGCTAGGTTGTCTATGCACTACATCCAGAAGGGCCTCCTTTTCAAAAAGCCCTCATCACTTGTTAACCAACAAGATTTCATTGATAATCTGTTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCCCTCTTCCATTTCTATCCATTGGCTGGCCGCCTTGTCACTCAAAAAACCCAACACCCTCCCTCTTATTCTGTTTTCATTGATTGCAGTGACAATAATTCCGGAGCTAGATTCATCTATGCAACTTTGGACATCACCATATCCGACATCCTCTCCCCCGTTGATGTTCCACCGCTTGTTCAGTCATTGTTTGATCTCCACAGGGCAATCAACCACGATGGTCACACCATGCCCTTGTTATCCATCCAAGTCACTGAACTTGTGGATGGTGTTTTCATTGGTTGTTCCATGAACCACTGCATTGGTGACGGGACTTCTTTTTGGAACTTCTTTAATTCATGGTCACACATCTTTCAAGCTCAAGCTCAAGGGCATGAGCATGATGATGTTCCTATTTTGCACCAACCCACTCATAATCGATGGTTTCCAGAGGGTTGCGGTCCACTGATCAATCTTCCCTTCAAACATCATGACGAGTTTATTAACAGATTTGAATCACCCAAACTGAGGGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAAGGCTAACTTACAGTCAAATAGCTCCAAAATCTCTTCTTTCCAATCCTTATCAGCACATGTTTGGAGATCCATAACTCGCGCGCGCCGCCTAACACATGACCAGAAAACAAGTTGTATGTTAGCCATAAACAATCGGTCAAGAATGGAACCGCCTCTGCCAAACGAGTACTTTGGAACCTCAATTAATGTGATGAGTGCAGGGGCGAAGGCAGGGGAATTGCTTGAGAACGATTTGGGATGGGCAGCATGGAAGGTTCACCTGGCTGTTGCAAACCATAACGACAGTGTAGTGCGTCAATTGCTCAAAGAATGGTTACAATCTCCGGTTGTCTACCAACCTAGTCTCCACTTTGATCCCAACAATGTGGCGATGTCAAGTTCACCGAGGTTTGACATGTATGGGAATGAATTTGGAATGGGGAAGGCAGTGGCTGTTAGAAGTGGGTATGCTAACAAATTTGATGGGATGGTGACAGCATACGAAGGATATGAAGGAGGGGGAAGCATAGATTTGGCTGTGTCTCTTTCGCCTGATGCAATGAGAGCCCTGGAATCAGACGAGGAGTTCATGGAGGCGGTTTCTGTGAGTTTGCTAATAGCACATAATAAAGAGCCAATTTTTGCTGTCAACCAACAATTCTCTTTTAGAATTTACAAACGATAA 1446 0.4461 MSSPAVRRVSECFIKPLHPTQESNHICYLTPWDIARLSMHYIQKGLLFKKPSSLVNQQDFIDNLLEKLKHSLSLALFHFYPLAGRLVTQKTQHPPSYSVFIDCSDNNSGARFIYATLDITISDILSPVDVPPLVQSLFDLHRAINHDGHTMPLLSIQVTELVDGVFIGCSMNHCIGDGTSFWNFFNSWSHIFQAQAQGHEHDDVPILHQPTHNRWFPEGCGPLINLPFKHHDEFINRFESPKLRERIFHFSAESIAKLKAKANLQSNSSKISSFQSLSAHVWRSITRARRLTHDQKTSCMLAINNRSRMEPPLPNEYFGTSINVMSAGAKAGELLENDLGWAAWKVHLAVANHNDSVVRQLLKEWLQSPVVYQPSLHFDPNNVAMSSSPRFDMYGNEFGMGKAVAVRSGYANKFDGMVTAYEGYEGGGSIDLAVSLSPDAMRALESDEEFMEAVSVSLLIAHNKEPIFAVNQQFSFRIYKR. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01428 481 Gene3D - 1 220 IPR023213 -
Seca3g01428 481 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 452 - -
Seca3g01428 481 Pfam Transferase family 10 451 - -
Seca3g01428 481 Gene3D - 230 446 IPR023213 -
Seca3g01428 481 FunFam Tryptamine hydroxycinnamoyl transferase 229 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01428 Seca-Chr3 24539523 24540968 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01428 48 445 Monolignol Biosynthesis Gene Families AT5G48930 27.990 5.83e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01428 - - lja:Lj1g3v1664450.1 718.383