Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01427 ATGAGTTCCCGTACAGTTCGATGCGTTTCGGAATGTTTTATCAAGCCGCTGCAGCACCTCACTGATGAATCAAACAGTATCTGCTATTTAACCCCTTGGGATATTGCTATGCTGTCTATGAACTACATCCAGAAGGGCCTCCTTTTCAAAAAGCCCTCATCACTTGTTAACCAACAAGATTTCATTGATAATCTATTGGAGAAGCTCAAGCACTCCCTTTCTCTTGCCCTTTTCCATTTCTATCCATTGGCTGGCCGCCTTGTAACTGAAAAAACCCAAGACCCTCCCTCTTATTCTATCTTCGTTGATTGCAAAAACAGTTCCGGTGCTAAATTTATCTATGCAACTTTGGACATCACCATATCCGACATCGTCTCCCCCGTTGACTTTTCACCGATTGTTCAGTCATTGTTTGATCTCAACAGAGCAATCAACCACGATGGTCACACCTTGCCCTTGTTATCCATCCAAGTAACCGAACTTGTGGACGGTGTTTTTATTGGTTGTTCCATGAACCACTGTATCGCTGATGGAACTTCTTATTGGAACTTCTTTAATACATGGTCTCACATCTTTCAAGCTCAAAGGCGAGGGCATGAGCATGAACATGGTGATGTTCCTATTTTGCACCAACCTATTCACAATCGATGGTTTCCAGAGGGTTGCGGTCCACTAATCAATCTTCCCTTCAAACATCATGATGAGTTTATTAATAGATATGAACCACCCAAGCTGAGAGAGAGGATCTTCCACTTTTCAGCAGAGTCTATTGCGAAACTAAAAGCAAAGGCTAACTTACAGTCAAATAGTACCAAAATCTCTTCGTTTCAATCCTTATCAGCACATGTTTGGAGATCCATAACTCGTGTGCGCGGCCTAACACATGATCAGAAAACAAGTTGTATGTTAGCTGTAAACAATCGACCAAGAATGGAACCGCCTCTGCCAAACGAGTACTTTGGAACATCAATTAATGTGGTGAGTGCAGAGGCGAAGGCAGGGGAATTGGTTGAGAATGATCTGGGATGGACAGCATGGAAGGTTCACCTTGCTGTTGCAAACTTTAACGACACTGTGGTGCGTCAATTGCTTAAAGAATGGTTACAATCCCCTGTTGTCTTCCAACCTAGTCTCCACTTTGATCCCTGCAGTGTGGCGATGTCAAGTTCACCAAGGTTTAACATGTATGGGAATGAATTTGGAATGGGGAAAGCTGTGGCTGTTAGAAGTGGGTATGCTAACAAATTTGATGGGATGGTGACAGCATACGAAGGATATGAAGAAGGGGGATGCATAGATTTGGCTGTGTCCCTTTCGCCTGAGGCAATGAGAGCCTTGGAATCAGACGAGGAGTTTATGGAGGCAGTTTCTGTGTCCACTCCCCTGTACTAG 1392 0.4382 MSSRTVRCVSECFIKPLQHLTDESNSICYLTPWDIAMLSMNYIQKGLLFKKPSSLVNQQDFIDNLLEKLKHSLSLALFHFYPLAGRLVTEKTQDPPSYSIFVDCKNSSGAKFIYATLDITISDIVSPVDFSPIVQSLFDLNRAINHDGHTLPLLSIQVTELVDGVFIGCSMNHCIADGTSYWNFFNTWSHIFQAQRRGHEHEHGDVPILHQPIHNRWFPEGCGPLINLPFKHHDEFINRYEPPKLRERIFHFSAESIAKLKAKANLQSNSTKISSFQSLSAHVWRSITRVRGLTHDQKTSCMLAVNNRPRMEPPLPNEYFGTSINVVSAEAKAGELVENDLGWTAWKVHLAVANFNDTVVRQLLKEWLQSPVVFQPSLHFDPCSVAMSSSPRFNMYGNEFGMGKAVAVRSGYANKFDGMVTAYEGYEEGGCIDLAVSLSPEAMRALESDEEFMEAVSVSTPLY. 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01427 463 Gene3D - 1 222 IPR023213 -
Seca3g01427 463 Pfam Transferase family 7 453 - -
Seca3g01427 463 FunFam Tryptamine hydroxycinnamoyl transferase 231 449 - -
Seca3g01427 463 Gene3D - 232 448 IPR023213 -
Seca3g01427 463 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01427 Seca-Chr3 24517278 24518669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01427 49 447 Monolignol Biosynthesis Gene Families AT5G48930 28.979 5.92e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01427 - - lja:Lj1g3v1664450.1 702.59