Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01412 ATGCCACTGGAATCTCTCAAATCGGACACCTATAGCTTCAGATATCATCAAAACAAGACAGGGAGGAAGAAGGGTGGGAAGGGTAGTTCACCACTTCCATGGTTTGTGAGGTACAAAGTTGCAGTTGGGATTGCAGAAGTTGTGGCTCATCTGCATAATGGAACTGAAAGATGTGTTGTTCATAGAGACATTAAGCCCTCAAACATTCTGCTCTCTTCTAAGAAGACTCCCAAGGTGCGAGATGTTTTCTTGTAA 255 0.4353 MPLESLKSDTYSFRYHQNKTGRKKGGKGSSPLPWFVRYKVAVGIAEVVAHLHNGTERCVVHRDIKPSNILLSSKKTPKVRDVFL. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01412 84 SUPERFAMILY Protein kinase-like (PK-like) 29 81 IPR011009 -
Seca3g01412 84 ProSitePatterns Serine/Threonine protein kinases active-site signature. 59 71 IPR008271 GO:0004672|GO:0006468
Seca3g01412 84 ProSiteProfiles Protein kinase domain profile. 1 84 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01412 84 Gene3D Transferase(Phosphotransferase) domain 1 15 84 - -
Seca3g01412 84 PANTHER OS01G0750732 PROTEIN 25 82 - -
Seca3g01412 84 Pfam Protein kinase domain 39 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01412 Seca-Chr3 24280923 24281893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01412 27 84 Receptor kinase-like Gene Family AT5G56890 51.724 2.91e-12 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g01412 Pkinase 3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01412 - - adu:107481060 110.923