Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01411 ATGGCGCAAATGCACGAGAATCCCACCGGTGACGCGGCGTCTCCGGGTGCGAACCAGTTTGTGACGACCTCATTGTACGTTGGGGATCTTGACCATGACGTCAACGATCCGCAGCTCTACGATCTCTTCAACCAGATCGGCCAAGTTGTTTCTGTTCGTGTCTGCAGGGACTTGGCCACTCAAGAATCTCTGGGTTACGGCTATGTCAATTTCAGTAACCCTCAAGACGCCGCGAAGGCGTTGGACGTGCTGAATTTCACTCCACTGAACAACAAACCGATTAGGATAATGTATTCTCATCGGGACCCTAGTGTTCGGCAGAGTGGTGCTGCTAATATTTTTGTCAAGAATTTGGATAAGGCGATCGATAACAAGACTCTATATGATACATTTTCGGTTTTTGGAAATATTCTATCTTGCAAGATAGCGACGGATACTTCTGGCCAGTCCAAAGGCTATGGCTTTGTGCAATTTGAGAGTGAAGAATCGGCACAAAATTCAATCGACAAGTTAAATGGCACGGTGATCAATGATAAACAGGTCTATGTAGGTCACTTCGTAAAAAAGCAGGATAGAGAGAATGCTCTCAGCAGTGCAAAGTTTAATAATGTCTATGTGAAAAACCTATCGGAGGCGATGACTGATGATGAGTTGAAGAAAATTTTCGGAGAATATGGAACTATTACGAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCGAAATGTTTTGGCTTTGTCAATTTTGAAAATGCAGATGCTGCTGCTAAAGCTGTGGAGGCACTTAATGGAGAGAAAATTGATAATAAGGAGTGGTATGTCGGAAAAGCCAAGAAAAAATCTGAAAGGGAGCTTGAACTGAAAGAACGACATGTGCAGAGTGTGAGGGAAACTGTTAAATTTCAAGGTGCAAACTTGTATCTCAAGAACTTGGATGATAGCATTGGTGATGAAAAACTCAAGGAACTGTTCTCTGAGTTTGGTACAGTAACTTCATACAAGGTCATGCGAGATCAACATGGAATTAGTAGAGGATCTGGATTTGTTTCATTTTCAACTCCTGAGGAAGCAACTCGAGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGAAAACCTCTCTATGTTGCCCATGCACAAAAGAAAGAAGAGAGAAGAGCAAGGTTACAGGCACAATTTTCACAAATGAGGCCAGTTGCGGTGTCCCCTTCTTATTCACCTCCCATGCCACTGTATCCTCCAGGGGCTCCAGGGATGGGACAATTTTTGTACGGGCAAGCACCTCCAGCCATGATACCTCATCAGCCTGGATTTGGTTACCAGCCGCAATATATTCCTAGCATGAGACCAGGTGGTGCTCCAATGCCAAACTTCTACATTCCACTGGTTCAGCAGGGACAAGGCCCGCGTCCAGGTGGACGCCTGGGAGTTAGTCCTATGCAGCAACTCCCGCAGCCAGTGCCATTGATTCGGCCACAGATGTTTCCAAGGGGGCATGTCTATCGATATCCTACTGGTCCAATGCCAGGAGTAGCTGGAGGAATGATCGCATTCTCTTATAGCATGGCTGGTCAGCCCATGCAAGCCCTGGCTACTTCCCTTGCAAATGCTCCTCCTGAACAGCACAGGAGTATGCTTGGTGAAGTTTTATACCCGCTAGTGGATAAGCTGGAGCATGATGCAGCAGCAAAGGTTACAGGCATGCTTTTGGAGATGGACCAGTCTGAGGTGTTACTTCTGATTGAGTCACCAGATGTTCTCAAGGAAAAAGTTGCTGAGGCCATGGATGTGTTGAGAAATTCTACACCGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCTCTCTCTCTCTGA 1857 0.4599 MAQMHENPTGDAASPGANQFVTTSLYVGDLDHDVNDPQLYDLFNQIGQVVSVRVCRDLATQESLGYGYVNFSNPQDAAKALDVLNFTPLNNKPIRIMYSHRDPSVRQSGAANIFVKNLDKAIDNKTLYDTFSVFGNILSCKIATDTSGQSKGYGFVQFESEESAQNSIDKLNGTVINDKQVYVGHFVKKQDRENALSSAKFNNVYVKNLSEAMTDDELKKIFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAKAVEALNGEKIDNKEWYVGKAKKKSERELELKERHVQSVRETVKFQGANLYLKNLDDSIGDEKLKELFSEFGTVTSYKVMRDQHGISRGSGFVSFSTPEEATRALGEMNGKMVAGKPLYVAHAQKKEERRARLQAQFSQMRPVAVSPSYSPPMPLYPPGAPGMGQFLYGQAPPAMIPHQPGFGYQPQYIPSMRPGGAPMPNFYIPLVQQGQGPRPGGRLGVSPMQQLPQPVPLIRPQMFPRGHVYRYPTGPMPGVAGGMIAFSYSMAGQPMQALATSLANAPPEQHRSMLGEVLYPLVDKLEHDAAAKVTGMLLEMDQSEVLLLIESPDVLKEKVAEAMDVLRNSTPQQSNSPADQLASLSL. 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01411 618 Gene3D - 3 111 IPR012677 -
Seca3g01411 618 FunFam Polyadenylate-binding protein 288 392 - -
Seca3g01411 618 SUPERFAMILY RNA-binding domain, RBD 23 192 IPR035979 GO:0003676
Seca3g01411 618 SUPERFAMILY RNA-binding domain, RBD 202 385 IPR035979 GO:0003676
Seca3g01411 618 CDD RRM2_I_PABPs 109 185 IPR045305 -
Seca3g01411 618 FunFam Polyadenylate-binding protein 522 604 - -
Seca3g01411 618 Gene3D - 300 389 IPR012677 -
Seca3g01411 618 Gene3D - 522 603 - -
Seca3g01411 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 381 IPR000504 GO:0003723
Seca3g01411 618 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 599 IPR006515 GO:0003723
Seca3g01411 618 FunFam Polyadenylate-binding protein 10 108 - -
Seca3g01411 618 FunFam Polyadenylate-binding protein 109 192 - -
Seca3g01411 618 CDD RRM1_I_PABPs 24 103 IPR034364 -
Seca3g01411 618 CDD RRM4_I_PABPs 303 381 - -
Seca3g01411 618 SMART poly_2 538 601 IPR002004 GO:0003723
Seca3g01411 618 Coils Coil 278 298 - -
Seca3g01411 618 SUPERFAMILY PABC (PABP) domain 480 612 IPR036053 GO:0003723
Seca3g01411 618 Gene3D - 201 299 IPR012677 -
Seca3g01411 618 SMART rrm2_1 305 377 IPR003954 GO:0003676
Seca3g01411 618 SMART rrm2_1 203 275 IPR003954 GO:0003676
Seca3g01411 618 SMART rrm2_1 112 184 IPR003954 GO:0003676
Seca3g01411 618 Pfam Poly-adenylate binding protein, unique domain 534 598 IPR002004 GO:0003723
Seca3g01411 618 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 526 603 IPR002004 GO:0003723
Seca3g01411 618 MobiDBLite consensus disorder prediction 599 618 - -
Seca3g01411 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Seca3g01411 618 SMART rrm1_1 305 377 IPR000504 GO:0003723
Seca3g01411 618 SMART rrm1_1 112 184 IPR000504 GO:0003723
Seca3g01411 618 SMART rrm1_1 24 97 IPR000504 GO:0003723
Seca3g01411 618 SMART rrm1_1 203 275 IPR000504 GO:0003723
Seca3g01411 618 FunFam Polyadenylate-binding protein 193 287 - -
Seca3g01411 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 279 IPR000504 GO:0003723
Seca3g01411 618 Gene3D - 112 200 IPR012677 -
Seca3g01411 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Seca3g01411 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 374 IPR000504 GO:0003723
Seca3g01411 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 25 95 IPR000504 GO:0003723
Seca3g01411 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 272 IPR000504 GO:0003723
Seca3g01411 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 23 101 IPR000504 GO:0003723
Seca3g01411 618 PANTHER RNA BINDING PROTEIN 22 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01411 Seca-Chr3 24214140 24226692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01411 17 618 Eukaryotic Initiation Factors Gene Family AT4G34110 63.756 0.0 763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01411 K13126 - gmx:100784442 908.672