Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01408 ATGGGAAACATGAAGGTGCATCAATTCGCACGTGGATTCTGGGAGCACGAACCCTCCCTCACGCTTGGGTGCAAGCGCTTACGCCCTCTTGCTCCCAAGCTTCCTAACACAGACACAACCCCCACCATTCCTTTCGATCTTAAGAGCTTCATCAGACCAGAAAGTGGCCCCAGAAAACTCATTTCCTCTGATGATACTAAGAAAGATCCACCTAATTCACCCAACGGCCAGCAGGTTGAAACGCATCCAGGAGGGACACGGTGGAATCCGACGCAAGAACAGATAAGCATATTGGAGATGTTGTACAGAGGAGGGATGCGAACTCCAAATGCTCAACAGATAGAGCAGATCACAGCACAGCTTGGCAAGTACGGCAAGATCGAAGGGAAAAATGTGTTTTATTGGTTTCAGAACCACAAAGCACGCGAGAGACAAAAGCAGAAACGTAACAGTCTTGGCCTTTCTCATAGTCCACGGACTCACACCATTCATACTATAACTTTAGAGACCACAAACACAACGGGGGAAGTACTAGTAGAAAGAGATGAGGAAGATAGTCCGTACAAGAAGTGTAGGAGATGGGTATTTGAGTGCTTGGAAGATCAACAAAGCAGGTTAACAGGAGGTAATAAAGAGGAGGAGGAACATAGAACTCTGGAGCTATTCCCATTGCACCCGGAAGGGAGATTATGA 693 0.4719 MGNMKVHQFARGFWEHEPSLTLGCKRLRPLAPKLPNTDTTPTIPFDLKSFIRPESGPRKLISSDDTKKDPPNSPNGQQVETHPGGTRWNPTQEQISILEMLYRGGMRTPNAQQIEQITAQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLGLSHSPRTHTIHTITLETTNTTGEVLVERDEEDSPYKKCRRWVFECLEDQQSRLTGGNKEEEEHRTLELFPLHPEGRL. 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01408 230 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Seca3g01408 230 Pfam Homeodomain 86 145 IPR001356 GO:0003677
Seca3g01408 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 4 229 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Seca3g01408 230 MobiDBLite consensus disorder prediction 30 90 - -
Seca3g01408 230 SUPERFAMILY Homeodomain-like 82 152 IPR009057 -
Seca3g01408 230 Gene3D - 85 152 - -
Seca3g01408 230 MobiDBLite consensus disorder prediction 67 90 - -
Seca3g01408 230 FunFam WUSCHEL-related homeobox 4 85 152 - -
Seca3g01408 230 MobiDBLite consensus disorder prediction 206 230 - -
Seca3g01408 230 CDD homeodomain 86 147 IPR001356 GO:0003677
Seca3g01408 230 SMART HOX_1 83 150 IPR001356 GO:0003677
Seca3g01408 230 MobiDBLite consensus disorder prediction 205 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01408 Seca-Chr3 24116215 24118452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01408 4 152 Wox Gene Family AT1G46480 64.634 3.85e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca3g01408 Homeodomain 3.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01408 - - gmx:100781015 355.14