Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01404 ATGGAGGAAGAAAGAGACTGTTGTTCCACCAATTCAACCATCACAAGAAGCAGCGGTAGCGGTAGCGGCAGCGGCGGCAGCAGCCTCCCGGAGAAGCGTAAGAGACAGCATCAAGACAAGCCTTACAGAGGGATAAGGATGAGGAAGTGGGGAAAGTGGGTTGCGGAGATTAGAGAACCCAACAAAAGGTCTAGGATTTGGTTGGGCTCTTACACCACACCAGTCGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTATTTAAGAGGACCTTCCGCTCGCCTTAACTTCCCGGAATTGTTATTCCAAGACGACGTCGTTTACGGTGATGGTTCCATCCAACAAGGCGACATGTCCGCCGATTCAATACGCAAAATTGCCACACAAGTCGGCGCCAGAGTGGACGCTCTCCAAACAGCTCTTAAGGCATCCTCTAGCTCCTCTTCCAGTCAAATCACCTCCGAGAAACCAGACTTGAACGAGTATCCAAAACCTGAAGATTAG 504 0.5218 MEEERDCCSTNSTITRSSGSGSGSGGSSLPEKRKRQHQDKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPVAAARAYDTAVFYLRGPSARLNFPELLFQDDVVYGDGSIQQGDMSADSIRKIATQVGARVDALQTALKASSSSSSSQITSEKPDLNEYPKPED. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01404 167 CDD AP2 42 100 IPR001471 GO:0003700|GO:0006355
Seca3g01404 167 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 28 167 - -
Seca3g01404 167 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Seca3g01404 167 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Seca3g01404 167 MobiDBLite consensus disorder prediction 10 29 - -
Seca3g01404 167 MobiDBLite consensus disorder prediction 141 167 - -
Seca3g01404 167 MobiDBLite consensus disorder prediction 1 41 - -
Seca3g01404 167 Pfam AP2 domain 42 90 IPR001471 GO:0003700|GO:0006355
Seca3g01404 167 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Seca3g01404 167 MobiDBLite consensus disorder prediction 141 157 - -
Seca3g01404 167 PRINTS Ethylene responsive element binding protein signature 80 100 IPR001471 GO:0003700|GO:0006355
Seca3g01404 167 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Seca3g01404 167 FunFam Ethylene-responsive transcription factor 2 40 99 - -
Seca3g01404 167 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01404 Seca-Chr3 24037029 24037532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01404 35 167 AP2-EREBP Transcription Factor Family AT2G23340 58.904 2.67e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g01404 AP2 2.7e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01404 K09286 - gmx:732579 214.927