Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01400 ATGCTGATGCTGATGCTATTGCTGCTGTCAAACACATTCTGTTACTGCTCCAAAAACGGAGATCATCATCTTCCACCGCCAGATGCTGCCGCTCTGCTTGCGTTCAAATCAAAAGCTGATCTGAACAACCGCCTCAACTTCTCCCGCCACCTCTATTTCTGCAAGTGGCAAGGTGTCGAATGCAACAACGGAACCAAAGTGGTCCATCTCCTTCTGCGAGGTTTAGATCTCGGAGGAGTTTTCGCTCCTCACACATTGTCCCGTCTTGACCAGCTCCGAGTCCTTAGTTTGCAAAACAACTCCCTCACCGGACCCATACCTGACCTCTCTGGTCTCTTCAATCTCAAAACCCTCTTCCTCGACAACAACCACTTCAACGGTTCTCTTCCTCCTTCTCTCTTCTCCCTTCACAGGCTTCGAACCTTGGATTTCTCTCACAACAATCTCTCCGGTCCCATCCCCGTCGCTTTCAACAACCTCGACCGTATCATCTACCTCTCTCTCAGTTGGAACGCTTTCAACGGTACCGTTCCTCCTCTCAACCAGTCTTCTCTCAAAACCTTCAACGTCTCCGGTAACAACCTCACCGGCGCCATTCCCGTTACGCCGACGCTGTTCCGTCTCCAGCCATCTTCCTTCGCTTCCAACCCTGGTCTCTGCGGCGAAATCATCCGCAGAGAATGCCGCCCTACCGCGCCTTTCTTCGCGCCGTCCTCGCCGCCGACGGTGGGGCTAGGCCAGAGCGCGCAGGTCCACGGCTTAATCCGGCAGCCGTACGAGAAGAGGCACGACCGGAGGGCGGTGATCATCGGTTTCTCGGCCGGAGTTTTTGTTCTGATCGGTTCGCTGGCGTGCTTCGTTGTGGCCATCAAGAAGCAAAGAAGCAAGAAAGGAGTTTCTTCTTCAGGTTCAAGTATAATGGCTTCGGATGCAGCTGCAACAGCAGAAGCTGCGGTTGTGGTGCAAATGGAGCAAGAGAGGGAGTTGGAGGAGAAGGTGAAGAGAGCGCAAGTGGCGAAGAGTGGGAGTTTAGTATTCTGTGCGGGTGAGGCACAGGTATATACCCTGGACCAGTTGATGAAAGGTTCTGCGGAGCTATTGGGTAGAGGGAGTTTGGGAACAACTTATAAGGCGGTGCTTGACAACCGTCTGATCGTAACGGTAAAGCGCCTTGATGCGAGCAAAATGGCTGCGCACGCAACCAAGGAAGTGTTTGAGCGACACATGGAATCAGTGGGTGGTCTTCGTCATCCTAATTTGGTTCCTCTTAGGGCTTATTTTCAGGCCAATCAAGAGAGACTCATTATCTATGACTACCAGCCCAATGGCAGTCTCTTCTCCCTCGTACACGGTTCCAGATCAAGCAGGGCAAGGCCATTGCACTGGACATCATGCTTAAAAATAGCAGAGGACGTAGCACAAGGCCTGTCCTACATCCACCAGGCATGGAGGCTGGTCCATGGCAATCTCAGGTCCTCCAATGTTCTACTTGGACCTGATTTTGAGGCATGCATCACAGATTACTGCCTCTCTGTGTTGACTAACCCATCAGTTTTCGATGAAGAGGGTGATTCTGCAGCCTACAGAGCTCCAGAGACTCGCAATCCAAATCACCAGCCAACCCCCAAATCCGACGTTTATGCATATGGGATTTTGTTGCTGGAGCTTCTGACGGGAAAATCTCCTTCCGAGCTCCCATTCATGGTTCCGGGTGATATGTCAAGTTGGGTGAGATCCATCAGGGAAGACAATGGGGGCGAAGACAACAGAATGGAAATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACATCGCCTGAGCAGAGGCCCACAATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTATTATTGGAGGATAGTGAATTGGACCTACCCAGTAGTAACGCCTTGCCTTAG 1929 0.5158 MLMLMLLLLSNTFCYCSKNGDHHLPPPDAAALLAFKSKADLNNRLNFSRHLYFCKWQGVECNNGTKVVHLLLRGLDLGGVFAPHTLSRLDQLRVLSLQNNSLTGPIPDLSGLFNLKTLFLDNNHFNGSLPPSLFSLHRLRTLDFSHNNLSGPIPVAFNNLDRIIYLSLSWNAFNGTVPPLNQSSLKTFNVSGNNLTGAIPVTPTLFRLQPSSFASNPGLCGEIIRRECRPTAPFFAPSSPPTVGLGQSAQVHGLIRQPYEKRHDRRAVIIGFSAGVFVLIGSLACFVVAIKKQRSKKGVSSSGSSIMASDAAATAEAAVVVQMEQERELEEKVKRAQVAKSGSLVFCAGEAQVYTLDQLMKGSAELLGRGSLGTTYKAVLDNRLIVTVKRLDASKMAAHATKEVFERHMESVGGLRHPNLVPLRAYFQANQERLIIYDYQPNGSLFSLVHGSRSSRARPLHWTSCLKIAEDVAQGLSYIHQAWRLVHGNLRSSNVLLGPDFEACITDYCLSVLTNPSVFDEEGDSAAYRAPETRNPNHQPTPKSDVYAYGILLLELLTGKSPSELPFMVPGDMSSWVRSIREDNGGEDNRMEMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSELDLPSSNALP. 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01400 642 Pfam Protein kinase domain 365 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01400 642 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Seca3g01400 642 SUPERFAMILY Protein kinase-like (PK-like) 365 625 IPR011009 -
Seca3g01400 642 Gene3D Ribonuclease Inhibitor 182 226 IPR032675 -
Seca3g01400 642 Gene3D Phosphorylase Kinase; domain 1 325 439 - -
Seca3g01400 642 Gene3D Ribonuclease Inhibitor 27 181 IPR032675 -
Seca3g01400 642 ProSiteProfiles Protein kinase domain profile. 361 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g01400 642 FunFam Nuclear pore complex protein NUP107 26 179 - -
Seca3g01400 642 Gene3D Transferase(Phosphotransferase) domain 1 441 632 - -
Seca3g01400 642 SUPERFAMILY L domain-like 49 221 - -
Seca3g01400 642 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 623 IPR046959 -
Seca3g01400 642 Pfam Leucine rich repeat 114 172 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01400 Seca-Chr3 23938000 23941913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g01400 28 640 Receptor kinase-like Gene Family AT5G43020 60.222 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca3g01400 Pkinase 5e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01400 - - cam:101511242 1018.84