Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g01388 ATGTTAAATGAAGAGAGTCTGTTGAAGTTTCATTTTCTTGATCTTGAAGTTGCATATGATTTCTATAATTGGTATGCCAGCTTTAAGGGTTTTTCAGTGCGCAAAAGCAAGGTGCGAAGACAGAAAAATGATGAGATTGTGGAGAAGAATTTTCTTTGTCACAGGGAAGGTAAGCAAACAAAAAAAGACCCTGTGAACCCTAAAAAGAAAAAACGTGTACCAAAGCCTGAAACTAGATGTTGTTGTTTGGCAAAAATGGTGGTGCGAATTAACCCGGAAAGTAAAAGGTGGCATGTGAAAAGTGTCATTGATGTGCACAACCACAACATGTTGGATCCACAACATTCAACTATGTTGCCTGCACATAGGAGAATGAGTGAATCCGATATAAATGAGATGAACAATATGCGCAAGGTGGGTATATCCATTCCTCAAATATATGGTGCATTTGCTAGTCAATCAGGTGGGTATGAACATGTAGGTTTTCGAAAAAGAGACATGTACAATGAGATAGGCAGGCAAAGACTTTTGCAATGTTCAGATGCCAAGGGTGTGGTCAAATACTTACGTGATTCAAATGATCCTGCCATGTTTTGGAGGCATACTGTTGATGGGGATGGGAGATTGCAACGTTTGTTTTGGTGTGACGGACGTAGCCAAGTTGATTACAATTTGTTTGGTGAAGTGATAGCCTTTGATGCAACTTACCGGAAGAATAAATATCATTTTCCTTTGGTTGTATTTTCCGGAGTAAATCATCACAACCAAACCACTATCTTTGCTACATGTCTAGTCTCCGATGAATCAGAGGAAACATACGTGTGGATCCTTGAGCAGTTGTTGGTGGCAATGAAAGGTAAGAAACCTACATTTGTTATTATGGATGGGGATGCTGCAATGAGAAATGCCATTAAACGTGTGTTTCCCTCCGCACATCATAGATTATGTGTGTGGCATCTCCTTCGTAATGCTACTACAAACATAAAAAATCCAAGGGTAGTTGCTTCGTTAAAAAGATGCATGTTAGGTGACTATGAGATTTATCAATTCTTGAAATCGCCCAGATCATTGTCTCAGCATGGACCAAATAAATTAATTACTCCCTGTGTATAA 1113 0.3908 MLNEESLLKFHFLDLEVAYDFYNWYASFKGFSVRKSKVRRQKNDEIVEKNFLCHREGKQTKKDPVNPKKKKRVPKPETRCCCLAKMVVRINPESKRWHVKSVIDVHNHNMLDPQHSTMLPAHRRMSESDINEMNNMRKVGISIPQIYGAFASQSGGYEHVGFRKRDMYNEIGRQRLLQCSDAKGVVKYLRDSNDPAMFWRHTVDGDGRLQRLFWCDGRSQVDYNLFGEVIAFDATYRKNKYHFPLVVFSGVNHHNQTTIFATCLVSDESEETYVWILEQLLVAMKGKKPTFVIMDGDAAMRNAIKRVFPSAHHRLCVWHLLRNATTNIKNPRVVASLKRCMLGDYEIYQFLKSPRSLSQHGPNKLITPCV. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g01388 370 PANTHER OS01G0519700 PROTEIN 5 342 - -
Seca3g01388 370 Pfam FAR1 DNA-binding domain 20 111 IPR004330 -
Seca3g01388 370 Pfam MULE transposase domain 229 323 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g01388 Seca-Chr3 23792117 23793229 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g01388 MULE 2.2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g01388 - - tpra:123913749 404.445